Co-expression analysis

Gene ID	Ta.30411.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62280: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.30411.1.S1_at	CK209297	-	-	5e+0	At5g62280	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	TaAffx.78517.1.S1_at	CA731451	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.51594.1.S1_at	CA723204	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.1	99.4	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
11.7	99.3	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.7	98.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig20696_at, orthologous to the query gene, Ta.30411.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	Contig20696_at	At5g62280	-	-	4e+0	At2g42190	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	HVSMEm0005J13r2_at	At5g62280	-	-	3e-4	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig12905_at	At5g62280	-	-	2e+0	At1g13400	NUB (NUBBIN)	O.I.	H.G.	S.X.	Please select
0.20	21.1	HP01K13T_at	At5g62280	-	-	3e+0	At5g39540	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	HT13I08r_at	At5g62280	-	-	3e+0	At1g57790	F-box family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig16957_at	At5g62280	-	-	5e+0	At3g06360	AGP27	O.I.	H.G.	S.X.	Please select
0.15	14.1	HV_CEa0008P09r2_s_at	At5g62280	-	-	1e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig24980_at	At5g62280	-	-	3e-1	At1g31370	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig7956_at	At5g62280	-	-	1e+0	At4g30180	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig7975_at	At5g62280	-	-	1e-1	At4g35600	CONNEXIN 32	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig19560_at	At5g62280	-	-	3e-1	At2g47510	FUM1 (FUMARASE 1)	O.I.	H.G.	S.X.	Please select
0.10	8.4	HF21E11r_at	At5g62280	-	-	1e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.	Please select
0.10	8.4	EBro03_SQ005_C24_s_at	At5g62280	-	-	4e+0	At5g40180	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig3496_at	At5g62280	-	-	2e-1	Atcg01070	-	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig20206_at	At5g62280	-	-	6e-3	At1g73010	phosphatase	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig11474_at	At5g62280	-	-	3e-6	At1g32850	UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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