Co-expression analysis

Gene ID Ta.303.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g28590: unknown protein (HF=3e+0)
Module size 6 genes
NF 0.63
%ile 88.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6383.10.89Ta.303.1.S1_x_atBG906281--3e+0At3g28590unknown proteinO.I.H.G.S.X.
0.8092.20.90Ta.303.3.S1_atAJ610447--2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.8092.20.90Ta.22415.1.S1_x_atCA743955--7e+0At5g24314PTAC7O.I.H.G.S.X.
0.7389.10.91Ta.303.3.S1_x_atAJ610447--2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.6182.00.89TaAffx.54157.2.S1_atCA663807--6e-3At1g74550CYP98A9O.I.H.G.S.X.
0.3651.90.86Ta.30113.1.S1_atCA629859--2e-5At1g56600AtGolS2 (Arabidopsis thaliana galactinol synthase 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.399.8GSM298058Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
25.799.8GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
25.299.8GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
20.699.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
17.899.7GSM298082Leaf tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
17.499.6GSM298081Leaf tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.699.1GSM298080Leaf tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.498.9GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298077Leaf tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298078Leaf tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0522740, orthologous to the query gene, Ta.303.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os12g0522740At3g28590--2e-1At5g23680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.5068.0Os07g0542300At3g28590--6e-1At5g10820integral membrane transporter family proteinO.I.H.G.S.X.
0.4660.9Os12g0172300At3g28590--6e+0At5g25240-O.I.H.G.S.X.
0.4660.9Os09g0377700At3g28590--1e-1At3g17940aldose 1-epimerase family proteinO.I.H.G.S.X.
0.4051.1Os04g0131400At3g28590--8e-1At5g64810WRKY51O.I.H.G.S.X.
0.3032.7Os06g0536900At3g28590--1e+0At1g12850phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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