Co-expression analysis

Gene ID	Ta.303.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g28590: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.63
%ile	88.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.89	Ta.303.1.S1_x_at	BG906281	-	-	3e+0	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.90	Ta.303.3.S1_at	AJ610447	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.90	Ta.22415.1.S1_x_at	CA743955	-	-	7e+0	At5g24314	PTAC7	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.91	Ta.303.3.S1_x_at	AJ610447	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.89	TaAffx.54157.2.S1_at	CA663807	-	-	6e-3	At1g74550	CYP98A9	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.86	Ta.30113.1.S1_at	CA629859	-	-	2e-5	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.3	99.8	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
25.7	99.8	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
25.2	99.8	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
20.6	99.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
17.8	99.7	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
17.4	99.6	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig2976_at, orthologous to the query gene, Ta.303.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.37	47.9	Contig2976_at	At3g28590	-	-	3e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig9548_at	At3g28590	-	-	9e-7	At3g63270	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig16381_at	At3g28590	-	-	2e+0	At1g75290	oxidoreductase, acting on NADH or NADPH	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig13118_at	At3g28590	-	-	2e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig94_at	At3g28590	-	-	4e-47	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12897_at	At3g28590	-	-	1e-3	At4g28600	NPGR2 (no pollen germination related 2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig8802_at	At3g28590	-	-	2e-3	At5g51510	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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