CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.303.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g28590: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.63

%ile 88.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.89 Ta.303.1.S1_x_at BG906281 - - 3e+0 At3g28590 unknown protein O.I. H.G. S.X.
0.80 92.2 0.90 Ta.303.3.S1_at AJ610447 - - 2e+0 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.80 92.2 0.90 Ta.22415.1.S1_x_at CA743955 - - 7e+0 At5g24314 PTAC7 O.I. H.G. S.X.
0.73 89.1 0.91 Ta.303.3.S1_x_at AJ610447 - - 2e+0 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.61 82.0 0.89 TaAffx.54157.2.S1_at CA663807 - - 6e-3 At1g74550 CYP98A9 O.I. H.G. S.X.
0.36 51.9 0.86 Ta.30113.1.S1_at CA629859 - - 2e-5 At1g56600 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.3 99.8 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
25.7 99.8 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
25.2 99.8 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
20.6 99.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
17.8 99.7 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
17.4 99.6 GSM298081 Leaf tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.6 99.1 GSM298080 Leaf tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.4 98.9 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM298077 Leaf tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g28590, orthologous to the query gene, Ta.303.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.29 30.3 At3g28590 822489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.86 93.1 At2g10870 815550 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.80 89.8 At5g33390 833329 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BMOPFVA O.I. H.G. S.X.
0.55 70.6 At2g24920 817030 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 At3g30480 822761 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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