Co-expression analysis

Gene ID Ta.30086.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g47050: glycosyl hydrolase family 3 protein (HF=7e-5)
Module size 6 genes
NF 0.14
%ile 27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.80Ta.30086.1.S1_atCA635096--7e-5At3g47050glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.4058.40.95TaAffx.49612.2.A1_atCA498714--5e-1At1g06980unknown proteinO.I.H.G.S.X.
0.2329.00.94TaAffx.8043.1.S1_atCA638319--2e+0At5g49010SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)O.I.H.G.S.X.
0.1922.40.96TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.067.60.94TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.067.60.90TaAffx.81381.1.S1_atCA686786--4e+0At4g36880CP1 (CYSTEINE PROTEINASE1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.196.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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