Co-expression analysis

Gene ID Ta.29930.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g60500: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (HF=5e+0)
Module size 6 genes
NF 0.49
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.92Ta.29930.1.S1_atBJ273225--5e+0At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.
0.7389.10.93TaAffx.129081.2.S1_s_atCA608630--2e-2At4g32714SCRL25 (SCR-Like 25)O.I.H.G.S.X.
0.4464.50.92Ta.424.1.S1_atCA644335--5e+0At4g02370unknown proteinO.I.H.G.S.X.
0.4362.20.92TaAffx.71016.1.A1_atBE424472--1e+0At3g22930calmodulin, putativeO.I.H.G.S.X.
0.3346.90.92TaAffx.43678.1.S1_x_atBF200239--9e+0At2g40100LHCB4.3 (light harvesting complex PSII)O.I.H.G.S.X.
0.2633.60.92Ta.16082.2.S1_atCK211295--2e+0At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.699.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.198.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1613679_at, orthologous to the query gene, Ta.29930.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5779.81613679_atAt5g60500--7e-5At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.
0.5779.81618075_atAt5g60500hypothetical protein LOC100249271-1e+0At5g40500unknown proteinO.I.H.G.S.X.
0.4057.71609188_atAt5g60500hypothetical protein LOC100267424-2e-11At5g54490PBP1 (PINOID-BINDING PROTEIN 1)O.I.H.G.S.X.
0.3141.31613407_atAt5g60500--1e+0At3g57280unknown proteinO.I.H.G.S.X.
0.3141.31613096_atAt5g60500hypothetical protein LOC100246707-9e-14At3g55980SZF1 (SALT-INDUCIBLE ZINC FINGER 1)O.I.H.G.S.X.
0.2937.71611432_atAt5g60500hypothetical protein LOC100265313-3e-5At5g54490PBP1 (PINOID-BINDING PROTEIN 1)O.I.H.G.S.X.
0.1718.21620072_s_atAt5g60500similar to Os01g0238200-5e+0At5g52870unknown proteinO.I.H.G.S.X.
0.077.81616198_atAt5g60500hypothetical protein LOC100242144-1e-7At1g28370ERF11 (ERF DOMAIN PROTEIN 11)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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