Co-expression analysis

Gene ID	Ta.29930.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g60500: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (HF=5e+0)
Module size	6 genes
NF	0.49
%ile	75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.92	Ta.29930.1.S1_at	BJ273225	-	-	5e+0	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.93	TaAffx.129081.2.S1_s_at	CA608630	-	-	2e-2	At4g32714	SCRL25 (SCR-Like 25)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.92	Ta.424.1.S1_at	CA644335	-	-	5e+0	At4g02370	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.92	TaAffx.71016.1.A1_at	BE424472	-	-	1e+0	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.92	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.92	Ta.16082.2.S1_at	CK211295	-	-	2e+0	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.1	98.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the barley gene, Contig12026_at, orthologous to the query gene, Ta.29930.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig12026_at	At5g60500	-	-	3e-2	At4g32714	SCRL25 (SCR-Like 25)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig22143_at	At5g60500	-	-	4e+0	At1g01500	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig17107_at	At5g60500	-	-	5e+0	At1g64628	CPuORF57 (Conserved peptide upstream open reading frame 57)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig13282_at	At5g60500	-	-	5e-8	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig11661_at	At5g60500	-	-	2e-28	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig12778_at	At5g60500	-	-	2e-3	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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