CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.29930.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g60500: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (HF=5e+0)

Module size 6 genes

NF 0.49

%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.92 Ta.29930.1.S1_at BJ273225 - - 5e+0 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.73 89.1 0.93 TaAffx.129081.2.S1_s_at CA608630 - - 2e-2 At4g32714 SCRL25 (SCR-Like 25) O.I. H.G. S.X.
0.44 64.5 0.92 Ta.424.1.S1_at CA644335 - - 5e+0 At4g02370 unknown protein O.I. H.G. S.X.
0.43 62.2 0.92 TaAffx.71016.1.A1_at BE424472 - - 1e+0 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.33 46.9 0.92 TaAffx.43678.1.S1_x_at BF200239 - - 9e+0 At2g40100 LHCB4.3 (light harvesting complex PSII) O.I. H.G. S.X.
0.26 33.6 0.92 Ta.16082.2.S1_at CK211295 - - 2e+0 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.6 99.2 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.1 98.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7 97.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM143523 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5170.1.A1_at, orthologous to the query gene, Ta.29930.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 67.7 Gma.5170.1.A1_at At5g60500 - - 5e-9 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) O.I. H.G. S.X.
0.52 73.1 GmaAffx.91865.1.S1_s_at At5g60500 - - 3e-1 At1g14560 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.50 71.7 GmaAffx.29037.1.S1_at At5g60500 - - 1e-1 At3g15170 CUC1 (CUP-SHAPED COTYLEDON1) O.I. H.G. S.X.
0.48 67.7 GmaAffx.1338.1.S1_at At5g60500 - - 1e+0 At5g16453 - O.I. H.G. S.X.
0.44 63.3 GmaAffx.17520.1.S1_at At5g60500 - - 1e+0 At1g20310 unknown protein O.I. H.G. S.X.
0.43 60.6 Gma.3285.1.S1_at At5g60500 - - 3e-4 At5g01750 unknown protein O.I. H.G. S.X.
0.40 57.1 GmaAffx.92099.1.S1_at At5g60500 - - 3e-1 At5g01750 unknown protein O.I. H.G. S.X.
0.28 39.0 GmaAffx.93428.1.S1_s_at At5g60500 - - 2e-2 At4g36500 unknown protein O.I. H.G. S.X.
0.26 33.9 GmaAffx.90671.1.S1_s_at At5g60500 - - 1e-37 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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