Co-expression analysis

Gene ID Ta.29930.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g60500: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (HF=5e+0)
Module size 6 genes
NF 0.49
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.92Ta.29930.1.S1_atBJ273225--5e+0At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.
0.7389.10.93TaAffx.129081.2.S1_s_atCA608630--2e-2At4g32714SCRL25 (SCR-Like 25)O.I.H.G.S.X.
0.4464.50.92Ta.424.1.S1_atCA644335--5e+0At4g02370unknown proteinO.I.H.G.S.X.
0.4362.20.92TaAffx.71016.1.A1_atBE424472--1e+0At3g22930calmodulin, putativeO.I.H.G.S.X.
0.3346.90.92TaAffx.43678.1.S1_x_atBF200239--9e+0At2g40100LHCB4.3 (light harvesting complex PSII)O.I.H.G.S.X.
0.2633.60.92Ta.16082.2.S1_atCK211295--2e+0At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.699.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.198.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g60500, orthologous to the query gene, Ta.29930.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.8491.9At5g60500836171undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinF:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAPO.I.H.G.S.X.
0.9396.4At2g03850814911late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFAO.I.H.G.S.X.
0.9296.0At1g68875843220unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9195.6At4g14815827138protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.H.G.S.X.
0.9195.6At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAO.I.H.G.S.X.
0.9095.1At1g74540843795CYP98A8member of CYP98AO.I.H.G.S.X.
0.9095.1At1g26710839212unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.8994.6At5g48210834874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8894.0At1g06260837137cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.H.G.S.X.
0.8894.0At1g13140837871CYP86C3member of CYP86CO.I.H.G.S.X.
0.8894.0At1g30020839881unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.5At1g75940843927ATA27encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.O.I.H.G.S.X.
0.8793.5At1g75910843924EXL4member of Lipase proteinsO.I.H.G.S.X.
0.8693.1At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVO.I.H.G.S.X.
0.8592.4At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.O.I.H.G.S.X.
0.8592.4At3g25050822096XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.O.I.H.G.S.X.
0.8592.4At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.H.G.S.X.
0.8391.4At5g65205836644short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.8290.9At1g13150837873CYP86C4member of CYP86CO.I.H.G.S.X.
0.8190.4At5g16960831559NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPAO.I.H.G.S.X.
0.7989.1At1g71160843456KCS7 (3-KETOACYL-COA SYNTHASE 7)Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.H.G.S.X.
0.7788.0At3g52160824381KCS15 (3-KETOACYL-COA SYNTHASE 15)Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.H.G.S.X.
0.7586.9At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)O.I.H.G.S.X.
0.7184.2At4g28395828956ATA7related to lipid transfer proteinsO.I.H.G.S.X.
0.6781.6At1g28375839734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6781.6At1g75790843912sks18 (SKU5 Similar 18)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.6579.6At1g02813839360unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.6579.6At1g33430840236galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPOO.I.H.G.S.X.
0.6579.6At3g15400820779ATA20Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.O.I.H.G.S.X.
0.6478.9At5g13380831179auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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