Co-expression analysis

Gene ID	Ta.29497.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g31940: unknown protein (HF=2e+0)
Module size	16 genes
NF	0.32
%ile	52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.95	Ta.29497.1.S1_at	CK194386	-	-	2e+0	At1g31940	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.97	Ta.28428.1.A1_at	CD916734	-	-	5e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.3950.1.A1_at	CD374053	-	-	1e-1	At3g23280	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	TaAffx.76633.1.S1_at	CK162934	-	-	8e-10	At3g02290	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	TaAffx.29873.1.S1_at	CA633751	-	-	3e+0	Atmg00760	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.29331.1.S1_a_at	CK168067	FD-like 6 protein	-	3e-16	At2g41070	EEL (ENHANCED EM LEVEL)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.9207.1.S1_at	CK212610	-	-	1e-8	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	TaAffx.55278.1.S1_x_at	CA668780	Plasma membrane H+-ATPase	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.27928.1.S1_at	CD897790	-	-	2e+1	At3g52510	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.9297.1.S1_at	BJ321859	-	-	2e+0	At2g07669	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.7444.1.A1_at	BJ320657	-	-	4e+0	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.5958.1.S1_at	BT008977.1	-	-	3e-3	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.24358.1.S1_s_at	CA611190	-	-	3e+0	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.9591.2.S1_x_at	CA688256	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.30793.1.S1_x_at	CK212652	-	-	1e-4	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.97	Ta.4798.1.S1_at	CK163023	Vacuolar proton ATPase subunit H	-	2e-8	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	99.0	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.9	98.7	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.6	98.3	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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