Co-expression analysis

Gene ID	Ta.2949.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g48410: AGO1 (ARGONAUTE 1) (HF=5e-9)
Module size	13 genes
NF	0.35
%ile	56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	75.5	0.92	Ta.2949.3.S1_at	BJ314614	-	-	5e-9	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	TaAffx.121889.1.S1_at	BJ291723	-	-	3e-6	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.6355.1.S1_at	CA687537	-	-	3e+0	At4g22950	AGL19 (AGAMOUS-LIKE 19)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	TaAffx.12489.1.S1_at	BJ259839	-	-	7e+0	At3g22090	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	TaAffx.114677.2.S1_s_at	CA593824	-	-	3e-7	At2g41620	nucleoporin interacting component family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.6828.3.S1_a_at	CK152792	-	-	1e-23	At1g20960	emb1507 (embryo defective 1507)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	TaAffx.27175.1.S1_at	CA680326	-	-	3e-1	At1g11190	BFN1 (BIFUNCTIONAL NUCLEASE I)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.29078.1.S1_at	CA640459	-	-	4e+0	At5g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.5352.2.S1_at	CK208861	-	-	3e-5	At2g35630	MOR1 (MICROTUBULE ORGANIZATION 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.28819.3.S1_a_at	BJ207606	-	-	4e-3	At2g33990	iqd9 (IQ-domain 9)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	TaAffx.120650.1.S1_s_at	BG608388	-	-	2e+0	At2g40080	ELF4 (EARLY FLOWERING 4)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.1587.1.S1_s_at	CA652320	-	-	1e-34	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	TaAffx.30863.1.S1_at	CA618182	-	-	2e+1	At5g22390	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.8	GSM143492	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM143490	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM143495	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM143491	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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