Co-expression analysis

Gene ID	Ta.29424.1.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=3e-1)
Module size	30 genes
NF	0.25
%ile	41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.84	Ta.29424.1.A1_a_at	CK205869	-	-	3e-1	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.93	TaAffx.129113.5.S1_at	CA723302	-	-	3e+0	At1g75240	AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.91	TaAffx.106023.1.S1_at	CA725837	-	-	7e-2	At3g57160	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.92	Ta.3465.1.A1_at	BJ273592	-	-	5e-1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.89	Ta.28132.1.S1_x_at	CA632830	-	-	8e-14	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	TaAffx.119471.1.S1_at	BJ271129	-	-	1e-2	At5g65860	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	Ta.10329.3.S1_at	CK217164	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	Ta.3224.2.S1_at	CD901083	-	-	6e-4	At2g40550	ETG1 (E2F TARGET GENE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.10329.17.S1_x_at	BJ308545	-	-	6e-22	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.66316.1.S1_at	BJ218093	-	-	4e-1	At4g35040	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	Ta.10329.20.S1_x_at	BF200454	-	-	9e-15	At3g53730	histone H4	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	Ta.6311.2.S1_at	CA601608	-	-	1e+0	At1g63410	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.10941.1.A1_at	BQ166864	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.88	TaAffx.120653.1.S1_at	BJ211390	-	-	3e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	Ta.2300.1.S1_a_at	BJ306899	-	-	8e+0	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.93	Ta.5793.2.S1_at	CK161475	-	-	6e-14	At5g55230	ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.13526.1.S1_at	BQ160888	-	-	1e-2	At1g16520	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.14587.1.S1_at	CK207741	-	-	8e-3	At3g29370	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	TaAffx.91620.1.A1_s_at	BJ310139	-	-	4e+0	At1g28270	RALFL4 (ralf-like 4)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	TaAffx.44615.1.A1_at	CK208222	-	-	5e-9	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.3224.1.A1_at	CD454672	-	-	4e-1	At2g40550	ETG1 (E2F TARGET GENE 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	TaAffx.29309.1.S1_at	CA645832	-	-	2e+0	At1g23360	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	TaAffx.23712.1.S1_at	CA731486	-	-	3e-1	At4g24015	zinc finger (RING-H2 type) protein-related	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.93	Ta.15883.1.S1_at	BJ310324	-	-	9e-3	At5g53320	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.7561.1.S1_at	BQ806632	-	-	7e-67	At4g02060	PRL (PROLIFERA)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.18385.1.S1_at	CA635612	-	-	1e+0	At2g01290	ribose-5-phosphate isomerase	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.91	Ta.18665.1.S1_at	CA640275	-	-	3e+0	At1g03055	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.106548.1.S1_at	CA716365	-	-	7e-1	At5g02560	HTA12	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.91	Ta.7056.1.A1_s_at	CD889802	-	-	1e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.91	TaAffx.116089.1.S1_at	CF133348	-	-	3e-5	At3g19590	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.9	97.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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