CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.29422.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g66260: RNA and export factor-binding protein, putative (HF=1e+0)

Module size 6 genes

NF 0.08

%ile 19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.83 Ta.29422.1.S1_at BJ312582 - - 1e+0 At1g66260 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.36 51.9 0.95 TaAffx.95180.1.S1_at BJ268467 - - 5e-4 At4g19020 CMT2 (chromomethylase 2) O.I. H.G. S.X.
0.21 25.5 0.95 TaAffx.50834.1.S1_at CA734839 - - 5e-1 At3g16970 self-incompatibility protein-related O.I. H.G. S.X.
0.18 21.0 0.96 Ta.27318.1.S1_at BG908329 - - 2e-76 At4g11380 beta-adaptin, putative O.I. H.G. S.X.
0.13 14.6 0.95 Ta.3078.3.S1_a_at CA677744 - - 1e+0 At4g28380 leucine-rich repeat family protein O.I. H.G. S.X.
0.01 2.4 0.93 Ta.9642.2.S1_a_at CA662794 - - 4e+0 At4g16360 AMP-activated protein kinase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.2 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4 98.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2 94.8 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey

Inter-species module comparison

A co-expression module including the maize gene, Zm.8920.2.S1_a_at, orthologous to the query gene, Ta.29422.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 Zm.8920.2.S1_a_at At1g66260 - - 8e-1 At5g15220 ribosomal protein L27 family protein O.I. H.G. S.X.
0.76 91.1 Zm.14934.1.A1_at At1g66260 CHCH domain containing protein - 1e+0 At3g09032 unknown protein O.I. H.G. S.X.
0.64 81.7 Zm.1585.1.S1_at At1g66260 profilin 2 - 6e-16 At4g29340 PRF4 (PROFILIN 4) O.I. H.G. S.X.
0.58 75.1 Zm.4017.2.S1_a_at At1g66260 ubiquitin-conjugating enzyme E2 I /// ubiquitin-conjugating enzyme E2 I - 1e-19 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.50 65.7 Zm.7143.1.S1_at At1g66260 myc transcription factor7 - 1e+0 At5g46760 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.46 58.4 Zm.7889.1.A1_at At1g66260 Somatic embryogenesis receptor-like kinase3 - 7e-30 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) O.I. H.G. S.X.
0.46 58.4 Zm.15848.1.A1_a_at At1g66260 - - 1e-3 At5g07090 40S ribosomal protein S4 (RPS4B) O.I. H.G. S.X.
0.39 45.6 Zm.16821.1.A1_at At1g66260 h/ACA ribonucleoprotein complex subunit 3-like protein - 2e+0 At4g20030 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.39 45.6 Zm.15207.1.A1_at At1g66260 nam1 protein - 4e+0 At5g08760 unknown protein O.I. H.G. S.X.
0.36 41.3 Zm.12394.1.S1_at At1g66260 hypothetical protein LOC100279308 - 2e-8 At2g40550 ETG1 (E2F TARGET GENE 1) O.I. H.G. S.X.
0.31 31.6 Zm.6532.6.A1_at At1g66260 hypothetical protein LOC100272908 /// abscisic stress ripening protein 2 /// abscisic stress ripening protein 2 - 1e-1 At1g62060 unknown protein O.I. H.G. S.X.
0.30 29.8 Zm.9569.1.A1_at At1g66260 polyadenylate-binding protein 2 - 5e-7 At5g65260 polyadenylate-binding protein family protein / PABP family protein O.I. H.G. S.X.
0.28 28.1 Zm.2807.1.A1_at At1g66260 zinc-finger protein 1 - 7e-1 At5g57345 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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