Co-expression analysis

Gene ID	Ta.29422.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g66260: RNA and export factor-binding protein, putative (HF=1e+0)
Module size	6 genes
NF	0.08
%ile	19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.83	Ta.29422.1.S1_at	BJ312582	-	-	1e+0	At1g66260	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.95180.1.S1_at	BJ268467	-	-	5e-4	At4g19020	CMT2 (chromomethylase 2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.50834.1.S1_at	CA734839	-	-	5e-1	At3g16970	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.27318.1.S1_at	BG908329	-	-	2e-76	At4g11380	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.95	Ta.3078.3.S1_a_at	CA677744	-	-	1e+0	At4g28380	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.9642.2.S1_a_at	CA662794	-	-	4e+0	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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