Co-expression analysis

Gene ID	Ta.29363.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g14350: SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) (HF=2e-6)
Module size	6 genes
NF	0.65
%ile	89.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.96	Ta.29363.1.S1_at	BJ263473	-	-	2e-6	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.1942.1.S1_x_at	CD887139	-	-	2e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.12561.1.S1_at	CK196288	-	-	3e-2	At1g13380	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.1942.1.S1_at	CD887139	-	-	2e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.12561.3.S1_at	BQ169774	-	-	3e-2	At1g13380	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.27649.1.S1_at	AB158407.1	CesA protein	-	2e-80	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.5	92.5	GSM143513	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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