CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2933.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At4g04953: unknown protein (HF=7e+0)

Module size 6 genes

NF 0.15

%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 66.8 0.91 Ta.2933.2.S1_a_at BQ162297 - - 7e+0 At4g04953 unknown protein O.I. H.G. S.X.
0.50 72.4 0.93 Ta.2933.2.S1_x_at BQ162297 - - 7e+0 At4g04953 unknown protein O.I. H.G. S.X.
0.22 27.1 0.93 TaAffx.133762.1.A1_at BJ306104 - - 1e+0 At4g34770 auxin-responsive family protein O.I. H.G. S.X.
0.18 21.0 0.94 Ta.4052.1.A1_a_at BJ263212 - - 2e+0 At1g57610 unknown protein O.I. H.G. S.X.
0.16 18.2 0.93 Ta.4052.2.A1_a_at BJ213636 - - 1e+0 At1g57610 unknown protein O.I. H.G. S.X.
0.04 5.8 0.92 TaAffx.46757.1.A1_at BJ319024 - - 4e+0 At5g65158 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
4.2 96.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9 96.1 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the rice gene, Os05g0106700, orthologous to the query gene, Ta.2933.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 Os05g0106700 At4g04953 - Chromosome condensation regulator protein(Fragment) 1e-13 At5g42140 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein O.I. H.G. S.X.
0.61 81.2 Os02g0654000 At4g04953 - Enoyl-CoA hydratase/isomerase domain containingprotein 1e-1 At4g16800 enoyl-CoA hydratase, putative O.I. H.G. S.X.
0.60 79.7 Os10g0194300 At4g04953 - Conserved hypothetical protein 3e-1 At1g69860 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.25 24.1 Os03g0589300 At4g04953 - Ovarian tumour, otubain domain containing protein 6e-6 At5g04250 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.16 11.3 Os05g0210500 At4g04953 - Timeless protein domain containing protein 2e+0 Atmg00820 - O.I. H.G. S.X.
0.10 5.7 Os04g0191600 At4g04953 - F-box protein interaction domain containingprotein 3e-1 At1g25330 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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