Co-expression analysis

Gene ID	Ta.2933.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g04953: unknown protein (HF=7e+0)
Module size	6 genes
NF	0.15
%ile	28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.8	0.91	Ta.2933.2.S1_a_at	BQ162297	-	-	7e+0	At4g04953	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.93	Ta.2933.2.S1_x_at	BQ162297	-	-	7e+0	At4g04953	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.133762.1.A1_at	BJ306104	-	-	1e+0	At4g34770	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.94	Ta.4052.1.A1_a_at	BJ263212	-	-	2e+0	At1g57610	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.93	Ta.4052.2.A1_a_at	BJ213636	-	-	1e+0	At1g57610	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.46757.1.A1_at	BJ319024	-	-	4e+0	At5g65158	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the barley gene, EBed02_SQ003_E04_at, orthologous to the query gene, Ta.2933.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	EBed02_SQ003_E04_at	At4g04953	-	-	1e+0	At1g70850	MLP34 (MLP-LIKE PROTEIN 34)	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig13423_at	At4g04953	-	-	1e-14	At1g19970	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig21900_at	At4g04953	-	-	1e+0	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig9877_at	At4g04953	-	-	5e-2	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig15915_at	At4g04953	-	-	2e-3	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig7497_at	At4g04953	-	-	8e-47	At3g19590	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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