Co-expression analysis

Gene ID	Ta.28955.1.S1_at
Gene name	peptidylprolyl isomerase
Homology with Arabidopsis	Similar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=5e-15)
Module size	6 genes
NF	0.33
%ile	53.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.28955.1.S1_at	BJ275294	peptidylprolyl isomerase	-	5e-15	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.7894.1.S1_at	CA678008	-	-	1e-27	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.20463.1.S1_at	BT009342.1	-	-	2e-5	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.98	Ta.14560.1.S1_at	BJ274621	-	-	2e-40	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.5934.1.S1_at	CD888662	-	-	4e-15	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.2847.1.S1_at	CK198392	-	-	7e-1	At4g26780	AR192	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9	99.1	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.3	98.8	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.0	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5	98.6	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.2	98.5	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.8	98.4	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.2379.1.S1_at, orthologous to the query gene, Ta.28955.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	Zm.2379.1.S1_at	At3g25230	peptidyl-prolyl isomerase	-	3e-19	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.19215.1.A1_at	At3g25230	splicing factor 45	-	4e-12	At1g30480	DRT111	O.I.	H.G.	S.X.	Please select
0.46	58.4	ZmAffx.466.1.A1_at	At3g25230	-	-	8e-4	At1g52870	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.5789.4.S1_at	At3g25230	gamma-tubulin 1	-	2e-128	At3g61650	TUBG1 (GAMMA-TUBULIN)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.19215.2.A1_at	At3g25230	-	-	2e-12	At1g30480	DRT111	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.5390.1.A1_at	At3g25230	single-stranded DNA-binding protein	-	9e+0	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.6553.1.A1_at	At3g25230	-	-	7e-51	At1g80070	SUS2 (ABNORMAL SUSPENSOR 2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.17567.1.A1_at	At3g25230	-	-	2e-14	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.13594.1.S1_at	At3g25230	knotted related homeobox3 /// KNOX1 domain containing protein	-	9e-19	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.6797.1.A1_at	At3g25230	hypothetical protein LOC100279100	-	4e+0	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.4619.2.A1_a_at	At3g25230	hypothetical protein LOC100273548	-	5e-29	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.3648.1.A1_at	At3g25230	-	-	1e-4	At5g66030	ATGRIP	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.5951.1.A1_at	At3g25230	-	-	3e-14	At3g50590	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.19148.1.A1_at	At3g25230	-	-	1e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.9302.1.A1_at	At3g25230	hypothetical protein LOC100192520	-	4e-1	At2g44065	ribosomal protein L2 family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.17159.1.A1_at	At3g25230	-	-	6e+0	At4g25490	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.6079.2.S1_at	At3g25230	60S ribosomal protein L23a	-	2e-62	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.8619.1.S1_at	At3g25230	flower-specific gamma-thionin	-	5e-1	At4g34160	CYCD3	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.6422.1.A1_at	At3g25230	INDETERMINATE-related protein 1	-	5e+0	At3g11280	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.4852.2.A1_at	At3g25230	Hypothetical protein LOC100192969	-	3e+0	At3g16300	integral membrane family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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