CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28955.1.S1_at

Gene name peptidylprolyl isomerase
Homology with Arabidopsis Similar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=5e-15)

Module size 6 genes

NF 0.33

%ile 53.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.96 Ta.28955.1.S1_at BJ275294 peptidylprolyl isomerase - 5e-15 At3g25230 ROF1 (ROTAMASE FKBP 1) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.7894.1.S1_at CA678008 - - 1e-27 At2g45240 MAP1A (METHIONINE AMINOPEPTIDASE 1A) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.20463.1.S1_at BT009342.1 - - 2e-5 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase O.I. H.G. S.X.
0.24 30.3 0.98 Ta.14560.1.S1_at BJ274621 - - 2e-40 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.
0.15 17.1 0.98 Ta.5934.1.S1_at CD888662 - - 4e-15 At2g20280 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.15 17.1 0.98 Ta.2847.1.S1_at CK198392 - - 7e-1 At4g26780 AR192 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.8 99.6 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9 99.1 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0 99.0 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.9 99.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.3 98.8 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3 98.8 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.0 98.8 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5 98.6 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.2 98.5 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.8 98.4 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the grape gene, 1609010_at, orthologous to the query gene, Ta.28955.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 95.1 1609010_at At3g25230 hypothetical protein LOC100266654 - 4e-34 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative O.I. H.G. S.X.
0.36 50.7 1607559_at At3g25230 hypothetical protein LOC100243367 - 4e+0 At2g31370 bZIP transcription factor (POSF21) O.I. H.G. S.X.
0.11 11.3 1610720_at At3g25230 hypothetical protein LOC100243517 - 2e-15 At5g53800 unknown protein O.I. H.G. S.X.
0.04 5.2 1620532_at At3g25230 hypothetical protein LOC100240981 - 2e-43 At5g13610 unknown protein O.I. H.G. S.X.
0.03 4.2 1619281_at At3g25230 hypothetical protein LOC100257172 - 5e-1 At3g57080 NRPE5 O.I. H.G. S.X.
0.02 3.2 1612868_at At3g25230 hypothetical protein LOC100254737 - 7e-81 At3g09200 60S acidic ribosomal protein P0 (RPP0B) O.I. H.G. S.X.
0.02 3.2 1618193_at At3g25230 - - 9e-1 At5g59160 TOPP2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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