Co-expression analysis

Gene ID	Ta.28955.1.S1_at
Gene name	peptidylprolyl isomerase
Homology with Arabidopsis	Similar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=5e-15)
Module size	6 genes
NF	0.33
%ile	53.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.28955.1.S1_at	BJ275294	peptidylprolyl isomerase	-	5e-15	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.7894.1.S1_at	CA678008	-	-	1e-27	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.20463.1.S1_at	BT009342.1	-	-	2e-5	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.98	Ta.14560.1.S1_at	BJ274621	-	-	2e-40	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.5934.1.S1_at	CD888662	-	-	4e-15	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.2847.1.S1_at	CK198392	-	-	7e-1	At4g26780	AR192	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9	99.1	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.3	98.8	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.0	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5	98.6	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.2	98.5	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.8	98.4	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.163969.1.S1_s_at, orthologous to the query gene, Ta.28955.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	PtpAffx.163969.1.S1_s_at	At3g25230	hypothetical protein	-	1e-29	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.217873.1.S1_s_at	At3g25230	hypothetical protein	-	2e-18	At2g01770	VIT1 (vacuolar iron transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.1564.1.A1_at	At3g25230	-	-	4e-14	At5g48570	peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.116041.1.S1_at	At3g25230	hypothetical protein	-	4e+0	At5g18900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.6828.1.A1_at	At3g25230	hypothetical protein	-	2e+0	At4g18975	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.152681.2.S1_s_at	At3g25230	hypothetical protein	-	7e-52	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage