CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28955.1.S1_at

Gene name peptidylprolyl isomerase
Homology with Arabidopsis Similar to At3g25230: ROF1 (ROTAMASE FKBP 1) (HF=5e-15)

Module size 6 genes

NF 0.33

%ile 53.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.96 Ta.28955.1.S1_at BJ275294 peptidylprolyl isomerase - 5e-15 At3g25230 ROF1 (ROTAMASE FKBP 1) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.7894.1.S1_at CA678008 - - 1e-27 At2g45240 MAP1A (METHIONINE AMINOPEPTIDASE 1A) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.20463.1.S1_at BT009342.1 - - 2e-5 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase O.I. H.G. S.X.
0.24 30.3 0.98 Ta.14560.1.S1_at BJ274621 - - 2e-40 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.
0.15 17.1 0.98 Ta.5934.1.S1_at CD888662 - - 4e-15 At2g20280 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.15 17.1 0.98 Ta.2847.1.S1_at CK198392 - - 7e-1 At4g26780 AR192 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.8 99.6 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9 99.1 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0 99.0 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.9 99.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.3 98.8 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3 98.8 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.0 98.8 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5 98.6 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.2 98.5 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.8 98.4 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g25230, orthologous to the query gene, Ta.28955.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.38 46.7 At3g25230 822117 ROF1 (ROTAMASE FKBP 1) Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. O.I. H.G. S.X.
0.44 57.2 At5g09590 830818 MTHSC70-2 (MITOCHONDRIAL HSP70 2) heat shock protein 70 (Hsc70-5); nuclear O.I. H.G. S.X.
0.40 50.8 At3g12050 820379 Aha1 domain-containing protein F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB O.I. H.G. S.X.
0.23 19.3 At2g25140 817052 CLPB4 (CASEIN LYTIC PROTEINASE B4) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress. O.I. H.G. S.X.
0.11 4.1 At3g07090 819895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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