Co-expression analysis

Gene ID	Ta.28883.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g20720: CPN20 (CHAPERONIN 20) (HF=5e+0)
Module size	7 genes
NF	0.70
%ile	92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.97	Ta.28883.1.A1_at	AJ612385	-	-	5e+0	At5g20720	CPN20 (CHAPERONIN 20)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.7261.2.A1_at	BJ309551	-	-	3e-1	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.1964.1.S1_x_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.7261.2.A1_a_at	BJ309551	-	-	3e-1	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.1964.3.S1_x_at	CK213330	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.97	Ta.7649.2.S1_x_at	BJ321934	-	-	8e-5	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.13250.2.S1_x_at	CK158867	-	-	7e-4	At5g20720	CPN20 (CHAPERONIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.9	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.2	98.8	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.9	98.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.8	98.7	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.1	98.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.5	97.8	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.4	95.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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