Co-expression analysis

Gene ID	Ta.28850.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g09840: CDC48 (CELL DIVISION CYCLE 48) (HF=1e-167)
Module size	7 genes
NF	0.56
%ile	81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.98	Ta.28850.1.S1_at	BJ262711	-	-	1e-167	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.98	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.21374.2.S1_at	CK208435	-	-	8e-66	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.4	GSM138146	genotype G13 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM138161	genotype A91 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM111215	genotype C58 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9	94.0	GSM138183	genotype A10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM111179	genotype DH95 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage