Co-expression analysis

Gene ID Ta.28847.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g10540: subtilase family protein (HF=8e-7)
Module size 26 genes
NF 0.68
%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.96Ta.28847.1.S1_atCA740446--8e-7At4g10540subtilase family proteinO.I.H.G.S.X.
0.8493.60.97Ta.8359.1.S1_atBQ172037--5e-1At3g26510octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.H.G.S.X.
0.8393.40.97Ta.8220.2.S1_x_atBM137368--3e-2At5g66330leucine-rich repeat family proteinO.I.H.G.S.X.
0.8192.40.96TaAffx.65336.1.A1_atBJ250133--1e+0At1g20190ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)O.I.H.G.S.X.
0.8092.20.96Ta.22220.1.S1_atBT008949.1--5e-9At5g57090EIR1 (ETHYLENE INSENSITIVE ROOT 1)O.I.H.G.S.X.
0.8092.20.97Ta.8357.1.S1_atBQ161784--2e+1At5g37780CAM1 (CALMODULIN 1)O.I.H.G.S.X.
0.7991.30.97Ta.8220.2.S1_atBM137368--3e-2At5g66330leucine-rich repeat family proteinO.I.H.G.S.X.
0.7891.10.97Ta.8641.1.S1_atBQ162159--2e+0At4g16520ATG8F (autophagy 8f)O.I.H.G.S.X.
0.7891.10.98Ta.8220.1.S1_atCD926799--3e-2At5g66330leucine-rich repeat family proteinO.I.H.G.S.X.
0.7690.10.97Ta.8220.1.S1_x_atCD926799--3e-2At5g66330leucine-rich repeat family proteinO.I.H.G.S.X.
0.7690.10.97Ta.8359.1.S1_s_atBQ172037--5e-1At3g26510octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.H.G.S.X.
0.7389.10.98Ta.9998.1.S1_atCD932107VPE1 protein-1e-9At2g25940ALPHA-VPE (alpha-vacuolar processing enzyme)O.I.H.G.S.X.
0.7188.00.97Ta.6504.1.S1_atCD938398--5e-1At5g67360ARA12O.I.H.G.S.X.
0.7087.20.96Ta.55.1.S1_x_atAF155217.2starch synthase IIA /// starch synthase IIa-2-3e-11At3g01180AtSS2 (starch synthase 2)O.I.H.G.S.X.
0.6986.90.96Ta.8220.3.S1_x_atBQ166959--2e+0At3g13445TBP1 (TATA BINDING PROTEIN 1)O.I.H.G.S.X.
0.6986.90.96Ta.4780.1.S1_atAL830511--4e+0At5g66110metal ion bindingO.I.H.G.S.X.
0.6786.30.96Ta.4814.2.A1_atBJ254722--7e-1At2g31730ethylene-responsive protein, putativeO.I.H.G.S.X.
0.6383.10.97Ta.24548.1.S1_atCD930155--9e+0At3g51100unknown proteinO.I.H.G.S.X.
0.6081.00.97Ta.30872.1.S1_atCN011647--2e-2At3g63310glutamate bindingO.I.H.G.S.X.
0.6081.00.97Ta.27776.1.S1_atBJ274612MADS-box transcription factor TaAGL2-3e-12At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.5979.80.97Ta.4900.1.S1_atBJ232326--1e-3At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.5879.20.97Ta.55.2.S1_atU66377.1starch synthase IIa-1-2e-13At3g01180AtSS2 (starch synthase 2)O.I.H.G.S.X.
0.5475.50.97Ta.21792.1.S1_s_atBQ169475--4e-1At1g52330unknown proteinO.I.H.G.S.X.
0.4869.00.97Ta.8197.2.A1_a_atCD886694--1e+0At5g20190bindingO.I.H.G.S.X.
0.4464.50.97Ta.13256.2.S1_atCK193207--1e-5At4g24180-O.I.H.G.S.X.
0.4260.90.97Ta.4814.1.A1_atBJ249832--5e-6At2g10560unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.699.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
9.099.0GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
8.598.9GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.592.5GSM111232genotype H8 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.492.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.492.0GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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