Co-expression analysis

Gene ID	Ta.28764.1.S1_s_at
Gene name	cysteine protease
Homology with Arabidopsis	Similar to At4g39090: RD19 (RESPONSIVE TO DEHYDRATION 19) (HF=7e-4)
Module size	6 genes
NF	0.54
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.87	Ta.28764.1.S1_s_at	AB109216.1	cysteine protease	-	7e-4	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.87	Ta.28764.1.S1_at	AB109216.1	cysteine protease	-	7e-4	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.85	TaAffx.107388.2.S1_s_at	CA634125	cysteine protease	-	2e-1	At2g37870	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.88	Ta.28125.2.S1_at	CA629648	-	-	1e+0	At3g27660	OLEO4 (OLEOSIN 4)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.90	Ta.18268.1.S1_at	CK211362	-	-	7e+0	At4g30370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.86	TaAffx.99282.1.A1_at	CK208158	-	-	5e+0	At3g15250	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.2	99.7	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
18.7	99.7	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.9	99.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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