Co-expression analysis

Gene ID Ta.28756.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=5e+0)
Module size 8 genes
NF 0.40
%ile 63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.91Ta.28756.2.S1_x_atCA655592--5e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.7188.00.91Ta.21570.1.A1_atCA694043--4e+0At5g07930MCT2 (mei2 C-Terminal RRM only like 2)O.I.H.G.S.X.
0.3854.70.92TaAffx.18372.1.S1_atCA734494--3e-1At1g19730ATTRX4O.I.H.G.S.X.
0.3651.90.93TaAffx.143995.17.A1_atAY188331--1e-3At5g60910AGL8 (agamous-like 8)O.I.H.G.S.X.
0.3549.80.94TaAffx.94679.2.A1_atCA696886--4e+0At5g62460zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3244.40.94Ta.645.3.A1_x_atCA669322--4e+0At1g48330unknown proteinO.I.H.G.S.X.
0.2939.20.92TaAffx.4587.2.S1_atCA737640--1e+1At5g16950unknown proteinO.I.H.G.S.X.
0.2024.00.93TaAffx.97533.2.S1_atBG908072--3e+0At1g65620AS2 (ASYMMETRIC LEAVES 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.199.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
18.099.7GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.297.5GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM138215genotype A77 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.897.2GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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