Co-expression analysis

Gene ID Ta.28756.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=5e+0)
Module size 35 genes
NF 0.49
%ile 74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.88Ta.28756.2.S1_atCA655592--5e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.7288.30.89Ta.691.2.S1_atBG908844--3e+0At5g16770AtMYB9 (myb domain protein 9)O.I.H.G.S.X.
0.6886.50.89TaAffx.21734.1.A1_atCA734848--8e-1At1g05400unknown proteinO.I.H.G.S.X.
0.6886.50.92TaAffx.6447.1.S1_x_atCA685739--9e-1At1g32763-O.I.H.G.S.X.
0.6886.50.92Ta.9050.3.S1_atCA662262--2e-2At4g35610zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.6182.00.91Ta.664.3.S1_atCA738342--3e+0At5g64670ribosomal protein L15 family proteinO.I.H.G.S.X.
0.6182.00.92Ta.28818.2.S1_atCA738792--3e+0At5g14440-O.I.H.G.S.X.
0.6182.00.88TaAffx.54368.1.S1_atCD922103--1e+0At1g07700thioredoxin family proteinO.I.H.G.S.X.
0.6081.00.91Ta.28828.1.A1_atCA628330--1e-5At3g06350MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)O.I.H.G.S.X.
0.5979.80.90TaAffx.128418.99.S1_atCA743741--3e-4At2g01320ABC transporter family proteinO.I.H.G.S.X.
0.5879.20.89TaAffx.128545.3.S1_atCA742615--1e+0At3g22450structural constituent of ribosomeO.I.H.G.S.X.
0.5779.20.92Ta.21490.1.S1_atBG907979--5e+0At5g50690AtHSD7 (hydroxysteroid dehydrogenase 7)O.I.H.G.S.X.
0.5576.80.89Ta.29202.1.S1_x_atCA744759--6e+0At5g6117040S ribosomal protein S19 (RPS19C)O.I.H.G.S.X.
0.5576.80.87TaAffx.104931.4.S1_atCA736416--3e+0At5g10590unknown proteinO.I.H.G.S.X.
0.5576.80.93Ta.9789.3.S1_atCA735187--4e-40At1g02130ARA-5 (ARABIDOPSIS RAS 5)O.I.H.G.S.X.
0.5475.50.90TaAffx.85070.1.S1_atCA625874--2e+0At5g50840-O.I.H.G.S.X.
0.5475.50.91Ta.15242.1.S1_atCA736657--8e+0At5g42520ATBPC6O.I.H.G.S.X.
0.5374.90.87TaAffx.5829.1.S1_atCA697697--4e+0At1g35255unknown proteinO.I.H.G.S.X.
0.5374.90.90TaAffx.50783.1.S1_atCA735438--2e+0At3g11620unknown proteinO.I.H.G.S.X.
0.5374.90.93Ta.24767.2.S1_atCA743485--2e-2At3g03380DegP7 (DegP protease 7)O.I.H.G.S.X.
0.4869.00.89Ta.13262.3.A1_atCA737243--4e+0At3g13850LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)O.I.H.G.S.X.
0.4767.90.92Ta.6166.3.S1_atCA742901--2e-39At2g19830SNF7.2O.I.H.G.S.X.
0.4565.20.92TaAffx.17257.3.A1_atCA743247--4e+0At4g08730unknown proteinO.I.H.G.S.X.
0.4464.50.92TaAffx.4392.1.A1_atBQ281739--6e-1At2g44680CKB4 (CASEIN KINASE II BETA SUBUNIT 4)O.I.H.G.S.X.
0.4464.50.91TaAffx.23473.1.S1_atCA734784--3e+0At5g65660hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4362.20.93Ta.9024.3.S1_atCA664992--5e-12At2g20650zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4260.90.92Ta.9465.2.A1_atCA637378--1e-3At2g40110yippee family proteinO.I.H.G.S.X.
0.3956.10.87TaAffx.23112.1.S1_atCA739494--1e-2At2g14390unknown proteinO.I.H.G.S.X.
0.3956.10.91Ta.30749.2.A1_atCA722026--2e-36At1g48900signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)O.I.H.G.S.X.
0.3753.00.89Ta.13671.2.S1_atCA707569--4e+0At5g06750protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.3549.80.90Ta.16985.2.S1_atCA746829--4e+0At4g16141sequence-specific DNA binding / transcription factor/ zinc ion bindingO.I.H.G.S.X.
0.3244.40.92Ta.28276.3.A1_atCA635278--1e+0At1g69935SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1)O.I.H.G.S.X.
0.3142.70.91TaAffx.104884.1.S1_atCA743578--3e-1At1g67250proteasome maturation factor UMP1 family proteinO.I.H.G.S.X.
0.2735.60.91TaAffx.50676.1.S1_atCA737056--3e-1At1g54230DNA bindingO.I.H.G.S.X.
0.2532.10.89Ta.5622.3.S1_atCA656056--1e+0At5g22510beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.099.4GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.697.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.997.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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