Co-expression analysis

Gene ID	Ta.28749.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g44610: RAB6A (HF=2e-59)
Module size	17 genes
NF	0.43
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.98	Ta.28749.1.S1_a_at	CK213968	-	-	2e-59	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.23753.2.S1_at	CK170677	-	-	4e-2	At3g27380	SDH2-1	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.98	Ta.24991.1.S1_x_at	CK214927	cytosolic glyceraldehyde-3-phosphate dehydrogenase GAPDH	-	4e-120	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.9617.1.S1_at	CD871450	-	-	8e-50	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.27578.1.S1_at	CN013235	-	-	1e-43	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.3152.1.S1_at	BJ253666	-	-	3e-161	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.24945.1.S1_at	BJ317763	phosphoglycerate kinase	-	6e-73	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.98	Ta.28740.1.S1_at	CD866215	-	-	2e-156	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.98	Ta.12803.1.S1_x_at	CA674406	-	-	3e-5	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.24916.3.S1_x_at	CA630515	-	-	8e-2	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.3309.3.S1_x_at	BE443725	-	-	2e-11	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.8145.1.S1_at	CD914485	-	-	1e-1	At3g23330	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.13823.1.S1_a_at	CK152063	-	-	7e+0	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.23107.3.S1_x_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.23107.1.S1_a_at	CK156982	-	-	1e-51	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	Ta.9176.1.S1_at	BJ218541	-	-	7e-47	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.98	Ta.2291.1.S1_x_at	CK215947	ADP-ribosylation factor	-	3e-111	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.8	96.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1	90.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
1.8	88.1	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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