Co-expression analysis

Gene ID Ta.28736.1.S1_at
Gene name inducible phenylalanine ammonia-lyase
Homology with ArabidopsisSimilar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=3e-14)
Module size 8 genes
NF 0.34
%ile 54.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.93Ta.28736.1.S1_atAY005474.1inducible phenylalanine ammonia-lyase-3e-14At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.4666.80.94Ta.13798.1.S1_atCK161291--2e-8At3g19450ATCAD4O.I.H.G.S.X.
0.4362.20.94Ta.14435.1.S1_atBU099502--1e-5At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.3854.70.93Ta.13275.1.S1_atBQ166293--1e-5At2g46225ABIL1 (Abi-1-like 1)O.I.H.G.S.X.
0.3040.90.94Ta.5227.3.S1_a_atCK171474--1e-49At3g17390MTO3 (METHIONINE OVER-ACCUMULATOR 3)O.I.H.G.S.X.
0.2839.20.94Ta.20769.1.S1_atCK194353--3e-4At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.2430.30.94Ta.20769.1.S1_x_atCK194353--3e-4At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.1922.40.94Ta.1376.1.S1_atCD868146--9e+0At5g19830aminoacyl-tRNA hydrolaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.1GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.797.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM314257tissue type: germinating seed, embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM314264tissue type: seedling, crown - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM314263tissue type: seedling, crown - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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