Co-expression analysis

Gene ID	Ta.28728.3.S1_at
Gene name	Plasma membrane intrinsic protein
Homology with Arabidopsis	Similar to At2g37180: RD28 (RESPONSIVE TO DESICCATION 28) (HF=3e-31)
Module size	12 genes
NF	0.42
%ile	67.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.94	Ta.28728.3.S1_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.88	94.4	0.94	Ta.28728.3.S1_x_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.95	Ta.5377.1.S1_at	CD452952	-	-	3e-4	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.96	Ta.3443.2.S1_x_at	BJ207862	-	-	3e+0	At1g15580	IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.96	Ta.28364.1.S1_x_at	AY543630.1	Plasma membrane H+-ATPase	-	1e-97	At4g30190	AHA2	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.3443.1.S1_x_at	CA665711	-	-	8e-6	At1g22050	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	TaAffx.85922.1.S1_s_at	CA618396	-	-	3e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.28364.1.S1_at	AY543630.1	plasma membrane H+-ATPase	-	1e-97	At4g30190	AHA2	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.7832.1.S1_at	CA646083	-	-	9e-2	At2g04900	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	TaAffx.29973.1.S1_at	CA631418	-	-	2e+0	At5g61410	RPE	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.10947.1.S1_at	CK152049	-	-	3e+0	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	TaAffx.55278.1.S1_x_at	CA668780	Plasma membrane H+-ATPase	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.5	98.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM143499	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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