Co-expression analysis

Gene ID	Ta.28670.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g63410: APG1 (ALBINO OR PALE GREEN MUTANT 1) (HF=4e-33)
Module size	6 genes
NF	0.38
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	Ta.12695.1.S1_at	CD373734	-	-	8e-3	At5g54170	-	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.28670.1.S1_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.21023.1.S1_s_at	CA642252	-	-	1e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	Ta.2307.1.S1_at	X15233.1	phosphoglycerate kinase	-	1e-92	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.3	99.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
9.4	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.1	97.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the maize gene, Zm.2855.1.A1_at, orthologous to the query gene, Ta.28670.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	Zm.2855.1.A1_at	At3g63410	inner envelope membrane protein	-	6e-23	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.12716.2.A1_at	At3g63410	-	-	3e+0	At1g12630	DNA binding / transcription activator/ transcription factor	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.18119.1.A1_at	At3g63410	-	-	9e-2	At5g41090	anac095 (Arabidopsis NAC domain containing protein 95)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.18339.1.A1_at	At3g63410	-	-	4e-4	At4g18190	ATPUP6	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.10972.1.S1_at	At3g63410	hypothetical protein AY107822	-	3e-6	At5g64500	membrane protein-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.12687.2.S1_at	At3g63410	-	-	9e-1	At5g59010	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.34.7.A1_x_at	At3g63410	Hypothetical protein LOC100192755	-	7e+0	At5g60330	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.9789.1.A1_at	At3g63410	-	-	1e-1	At3g22183	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.1033.1.A1_at	At3g63410	-	-	1e+0	At3g50780	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.6182.1.S1_at	At3g63410	60S ribosomal protein L29	-	1e-21	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.4283.2.S1_at	At3g63410	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.5322.1.A1_a_at	At3g63410	hypothetical protein LOC100273032 /// hypothetical protein LOC100274445	-	9e-152	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.16836.1.A1_at	At3g63410	hypothetical protein LOC100193667	-	7e-2	At1g80400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.11624.1.A1_at	At3g63410	thioredoxin H-type	-	3e-1	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.10662.1.S1_at	At3g63410	-	-	2e+0	At3g24516	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.7058.1.A1_at	At3g63410	-	-	1e-78	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage