CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28670.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g63410: APG1 (ALBINO OR PALE GREEN MUTANT 1) (HF=4e-33)

Module size 6 genes

NF 0.38

%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.96 Ta.28670.1.S1_x_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.80 92.2 0.96 Ta.12695.1.S1_at CD373734 - - 8e-3 At5g54170 - O.I. H.G. S.X.
0.73 89.1 0.96 Ta.28670.1.S1_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.33 46.9 0.96 Ta.27728.1.S1_at AF314182.2 triose phosphate translocator - 3e-22 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) O.I. H.G. S.X.
0.26 33.6 0.96 Ta.21023.1.S1_s_at CA642252 - - 1e+0 At5g49280 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.13 14.6 0.96 Ta.2307.1.S1_at X15233.1 phosphoglycerate kinase - 1e-92 At1g56190 phosphoglycerate kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.3 99.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
9.4 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
5.3 97.6 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.1 97.5 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5 96.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the rice gene, Os12g0615400, orthologous to the query gene, Ta.28670.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os12g0615400 At3g63410 - 37 kDa inner envelope membrane protein,chloroplast precursor (E37) 2e-23 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.83 95.8 Os06g0484600 At3g63410 - - 6e+0 At5g10880 tRNA synthetase-related / tRNA ligase-related O.I. H.G. S.X.
0.73 91.1 Os01g0963400 At3g63410 - The start codon is not identified. 9e-11 At1g43560 Aty2 (Arabidopsis thioredoxin y2) O.I. H.G. S.X.
0.63 82.7 Os02g0768600 At3g63410 - - 2e-68 At5g09650 AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) O.I. H.G. S.X.
0.59 78.0 Os02g0634500 At3g63410 - ATP-dependent Clp protease, proteolytic subunitClpP (EC 3.4.21.92) 2e-3 At5g23140 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) O.I. H.G. S.X.
0.27 27.5 Os02g0537700 At3g63410 - 2-cys peroxiredoxin BAS1, chloroplast precursor(Thiol-specific antioxidant protein) (Fragment) 2e-71 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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