CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28670.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g63410: APG1 (ALBINO OR PALE GREEN MUTANT 1) (HF=4e-33)

Module size 6 genes

NF 0.38

%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.96 Ta.28670.1.S1_x_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.80 92.2 0.96 Ta.12695.1.S1_at CD373734 - - 8e-3 At5g54170 - O.I. H.G. S.X.
0.73 89.1 0.96 Ta.28670.1.S1_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.33 46.9 0.96 Ta.27728.1.S1_at AF314182.2 triose phosphate translocator - 3e-22 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) O.I. H.G. S.X.
0.26 33.6 0.96 Ta.21023.1.S1_s_at CA642252 - - 1e+0 At5g49280 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.13 14.6 0.96 Ta.2307.1.S1_at X15233.1 phosphoglycerate kinase - 1e-92 At1g56190 phosphoglycerate kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.3 99.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
9.4 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
5.3 97.6 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.1 97.5 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5 96.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1938.1.S1_a_at, orthologous to the query gene, Ta.28670.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 Gma.1938.1.S1_a_at At3g63410 - - 2e-59 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.74 89.2 Gma.4917.1.S1_at At3g63410 - - 6e-20 At1g04940 TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20) O.I. H.G. S.X.
0.73 88.9 Gma.10852.3.S1_at At3g63410 - - 7e-10 At4g25370 Clp amino terminal domain-containing protein O.I. H.G. S.X.
0.69 86.8 Gma.7906.1.S1_at At3g63410 - - 7e-9 At1g63610 unknown protein O.I. H.G. S.X.
0.67 86.1 Gma.6940.1.A1_at At3g63410 - - 5e+0 At2g39320 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.63 82.9 Gma.301.1.S1_at At3g63410 - - 1e-32 At3g13490 OVA5 (OVULE ABORTION 5) O.I. H.G. S.X.
0.63 82.9 Gma.7497.1.S1_at At3g63410 OAS-TL4 cysteine synthase (OAS-TL4) - 7e-60 At2g43750 OASB (O-ACETYLSERINE (THIOL) LYASE B) O.I. H.G. S.X.
0.63 82.9 Gma.7276.1.S1_at At3g63410 - - 2e-31 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related O.I. H.G. S.X.
0.63 82.9 Gma.1487.1.A1_at At3g63410 - - 7e-16 At2g34460 flavin reductase-related O.I. H.G. S.X.
0.62 82.1 Gma.9121.1.S1_at At3g63410 - - 2e-34 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) O.I. H.G. S.X.
0.61 81.8 GmaAffx.81837.1.S1_at At3g63410 - - 5e-81 At4g17040 ATP-dependent Clp protease proteolytic subunit, putative O.I. H.G. S.X.
0.60 80.7 Gma.13877.1.A1_at At3g63410 - - 2e-27 At1g31190 IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) O.I. H.G. S.X.
0.59 79.5 Gma.16456.1.A1_at At3g63410 - - 2e-4 At3g28970 AAR3 (antiauxin-resistant 3) O.I. H.G. S.X.
0.50 71.7 Gma.5276.1.S1_at At3g63410 - - 8e-36 At4g13430 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) O.I. H.G. S.X.
0.42 59.3 Gma.2654.1.S1_at At3g63410 - - 5e-63 At2g43945 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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