CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28670.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g63410: APG1 (ALBINO OR PALE GREEN MUTANT 1) (HF=4e-33)

Module size 6 genes

NF 0.38

%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.96 Ta.28670.1.S1_x_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.80 92.2 0.96 Ta.12695.1.S1_at CD373734 - - 8e-3 At5g54170 - O.I. H.G. S.X.
0.73 89.1 0.96 Ta.28670.1.S1_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.33 46.9 0.96 Ta.27728.1.S1_at AF314182.2 triose phosphate translocator - 3e-22 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) O.I. H.G. S.X.
0.26 33.6 0.96 Ta.21023.1.S1_s_at CA642252 - - 1e+0 At5g49280 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.13 14.6 0.96 Ta.2307.1.S1_at X15233.1 phosphoglycerate kinase - 1e-92 At1g56190 phosphoglycerate kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.3 99.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
9.4 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
5.3 97.6 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.1 97.5 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5 96.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g63410, orthologous to the query gene, Ta.28670.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.23 19.3 At3g63410 825516 APG1 (ALBINO OR PALE GREEN MUTANT 1) Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis. O.I. H.G. S.X.
0.23 19.3 At4g24770 828579 RBP31 (31-KDA RNA BINDING PROTEIN) Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). O.I. H.G. S.X.
0.22 17.5 At1g29070 839781 ribosomal protein L34 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF O.I. H.G. S.X.
0.19 12.7 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 O.I. H.G. S.X.
0.18 11.4 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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