Co-expression analysis

Gene ID	Ta.28670.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g63410: APG1 (ALBINO OR PALE GREEN MUTANT 1) (HF=4e-33)
Module size	12 genes
NF	0.45
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.96	Ta.28670.1.S1_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.96	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.2307.1.S1_at	X15233.1	phosphoglycerate kinase	-	1e-92	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.98	Ta.1161.1.S1_at	BJ261576	-	-	4e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.28361.2.S1_x_at	CK216267	-	-	8e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.28361.2.S1_at	CK216267	-	-	8e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.24304.2.S1_a_at	CK212788	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	TaAffx.15726.1.S1_at	CA722542	-	-	7e+0	At3g44180	syntaxin-related family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.98	Ta.27751.2.S1_x_at	CK214731	-	-	4e-27	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.28361.1.S1_x_at	CA619696	-	-	8e-2	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
11.0	99.3	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage