Co-expression analysis

Gene ID Ta.28644.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g06390: integral membrane family protein (HF=1e-3)
Module size 6 genes
NF 0.49
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.83Ta.28644.1.S1_atCA663084--1e-3At3g06390integral membrane family proteinO.I.H.G.S.X.
0.5576.80.91TaAffx.21905.1.S1_x_atCD871843--4e-4At3g24503ALDH2C4O.I.H.G.S.X.
0.5072.40.90TaAffx.21905.1.S1_atCD871843--4e-4At3g24503ALDH2C4O.I.H.G.S.X.
0.5072.40.91Ta.5805.2.S1_atCA597583--3e-14At3g24503ALDH2C4O.I.H.G.S.X.
0.4260.90.81Ta.27245.1.S1_s_atCA646215--6e-5At3g22240unknown proteinO.I.H.G.S.X.
0.2329.00.90Ta.13897.1.S1_atBQ743308--1e+0At5g57440GS1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.799.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
28.499.8GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
28.299.8GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
17.199.6GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
16.199.6GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
14.999.5GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0442900, orthologous to the query gene, Ta.28644.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.6Os07g0442900At3g06390-Plant integral membrane protein family protein5e-1At3g06390integral membrane family proteinO.I.H.G.S.X.
0.5068.0Os01g0975300At3g06390-Myb-related protein Atmyb5 (Myb-related protein 5)(MYB transcription factor)5e-3At5g37550unknown proteinO.I.H.G.S.X.
0.4051.1Os09g0409100At3g06390-Conserved hypothetical protein2e+0At5g51590DNA-binding protein-relatedO.I.H.G.S.X.
0.4051.1Os02g0218800At3g06390-Allene oxide synthase (EC 4.2.1.92)2e-1At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.3948.3Os09g0361300At3g06390-Conserved hypothetical protein2e+0At4g35837unknown proteinO.I.H.G.S.X.
0.3541.7Os07g0539300At3g06390-Glycoside hydrolase, family 17 protein2e-2At1g77790glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.2422.4Os03g0288000At3g06390-Metallothionein-like protein 1 (MT-1)4e-1At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.2016.5Os04g0452700At3g06390-Monosaccharide transporter 14e-6At1g34580monosaccharide transporter, putativeO.I.H.G.S.X.
0.1510.3Os01g0284500At3g06390-Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn])7e-3At1g02335GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)O.I.H.G.S.X.
0.149.3Os06g0692100At3g06390-Protein kinase domain containing protein1e-1At1g48480RKL1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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