Co-expression analysis

Gene ID	Ta.28628.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g22260: OTU-like cysteine protease family protein (HF=6e+0)
Module size	7 genes
NF	0.57
%ile	83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.97	Ta.28628.1.A1_at	BQ162670	-	-	6e+0	At3g22260	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.97	Ta.8189.1.S1_at	BQ161562	-	-	3e-12	At5g51020	CRL (CRUMPLED LEAF)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.10795.1.S1_at	BQ483940	-	-	6e-1	At1g28580	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.22990.1.S1_at	BG909133	zeta-carotene desaturase	-	4e-25	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.6749.1.S1_at	BJ310539	-	-	8e-3	At3g44620	protein tyrosine phosphatase	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.10947.1.S1_at	CK152049	-	-	3e+0	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.3365.1.S1_at	CD920769	-	-	6e-1	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
11.0	99.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.6	98.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage