Co-expression analysis

Gene ID Ta.28600.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At3g45010: scpl48 (serine carboxypeptidase-like 48) (HF=1e-7)
Module size 6 genes
NF 0.72
%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.94Ta.28600.2.S1_a_atCA720107--1e-7At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.
0.8393.40.95Ta.28600.3.S1_x_atCA641063--4e-9At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.
0.8092.20.96Ta.28600.2.S1_atCA720107--1e-7At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.
0.6081.00.97Ta.28600.1.S1_atBE443069--2e-9At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.
0.4362.20.95Ta.20696.1.S1_atBQ804501--1e+1At5g04180ACA3 (ALPHA CARBONIC ANHYDRASE 3)O.I.H.G.S.X.
0.4058.40.97Ta.28600.1.S1_a_atBE443069--2e-9At3g45010scpl48 (serine carboxypeptidase-like 48)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.0GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM111245genotype G13 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.094.3GSM138173genotype DH95 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM138204genotype H8 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM138211genotype B65 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.893.6GSM138200genotype F48 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.893.6GSM314281tissue type: 3-5 DAP caryopsis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.893.6GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.893.6GSM314272tissue type: floral bracts, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.793.3GSM314274tissue type: floral bracts, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig600_at, orthologous to the query gene, Ta.28600.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5268.3Contig600_atAt3g45010--1e-12At3g10410scpl49 (serine carboxypeptidase-like 49)O.I.H.G.S.X.
0.6380.3Contig2152_atAt3g45010--5e-6At2g01760ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)O.I.H.G.S.X.
0.5774.9Contig1075_atAt3g45010--7e+0At4g36500unknown proteinO.I.H.G.S.X.
0.5674.3HS07I12u_x_atAt3g45010--3e+0At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.5066.9HS07I12u_s_atAt3g45010--3e+0At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.5066.9Contig10759_atAt3g45010--7e-1At5g15150ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)O.I.H.G.S.X.
0.4053.1Contig13823_atAt3g45010--2e-4At5g13170SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)O.I.H.G.S.X.
0.2935.5Contig12336_atAt3g45010--8e-5At3g22240unknown proteinO.I.H.G.S.X.
0.2224.2Contig10287_atAt3g45010--1e+0At1g20430unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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