Co-expression analysis

Gene ID	Ta.28600.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g45010: scpl48 (serine carboxypeptidase-like 48) (HF=1e-7)
Module size	6 genes
NF	0.72
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.94	Ta.28600.2.S1_a_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.95	Ta.28600.3.S1_x_at	CA641063	-	-	4e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	Ta.28600.2.S1_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.28600.1.S1_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	Ta.20696.1.S1_at	BQ804501	-	-	1e+1	At5g04180	ACA3 (ALPHA CARBONIC ANHYDRASE 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.28600.1.S1_a_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM111245	genotype G13 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0	94.3	GSM138173	genotype DH95 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138204	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.17324.1.S1_at, orthologous to the query gene, Ta.28600.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	GmaAffx.17324.1.S1_at	At3g45010	-	-	4e+0	At3g58100	PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.95	99.4	soybean_rRNA_1021_at	At3g45010	-	-	2e+1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.95	99.4	soybean_rRNA_692_at	At3g45010	-	-	5e+0	At2g41750	DTW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.95	99.4	GmaAffx.1301.14.S1_s_at	At3g45010	-	-	5e+0	At5g50440	MEMB12 (MEMBRIN 12)	O.I.	H.G.	S.X.	Please select
0.95	99.4	soybean_rRNA_1479_at	At3g45010	-	-	1e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	99.1	Gma.17620.1.S1_s_at	At3g45010	-	-	2e+1	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	99.1	GmaAffx.89786.1.A1_s_at	At3g45010	-	-	7e+0	At5g09711	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.6	soybean_rRNA_349_at	At3g45010	-	-	5e+0	At4g11140	CRF1 (CYTOKININ RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.89	93.5	soybean_rRNA_666_at	At3g45010	-	-	5e+0	At5g25475	DNA binding	O.I.	H.G.	S.X.	Please select
0.89	93.5	soybean_rRNA_918_at	At3g45010	-	-	5e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.	Please select
0.86	93.0	GmaAffx.89772.42.S1_x_at	At3g45010	-	-	5e+0	At5g56070	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	soybean_rRNA_808_at	At3g45010	-	-	5e+0	At5g09711	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	soybean_rRNA_1665_at	At3g45010	-	-	2e-2	At3g50390	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	soybean_rRNA_718_at	At3g45010	-	-	2e+1	At1g07350	transformer serine/arginine-rich ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.84	92.6	soybean_rRNA_637_at	At3g45010	-	-	5e+0	At3g01920	yrdC family protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	soybean_rRNA_1692_at	At3g45010	-	-	2e+1	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.83	92.5	soybean_rRNA_1531_at	At3g45010	-	-	3e-1	At3g22450	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.79	90.8	soybean_rRNA_838_at	At3g45010	-	-	1e+0	At4g27700	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	soybean_rRNA_1721_at	At3g45010	-	-	1e+0	At3g56290	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	GmaAffx.88935.1.A1_s_at	At3g45010	-	-	4e+0	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.75	89.5	PsAffx.CL3Contig2_s_at	At3g45010	-	-	3e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select
0.72	88.1	GmaAffx.89665.1.A1_s_at	At3g45010	-	-	5e+0	At3g17350	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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