CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28600.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At3g45010: scpl48 (serine carboxypeptidase-like 48) (HF=1e-7)

Module size 6 genes

NF 0.72

%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.94 Ta.28600.2.S1_a_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.
0.83 93.4 0.95 Ta.28600.3.S1_x_at CA641063 - - 4e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.
0.80 92.2 0.96 Ta.28600.2.S1_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.
0.60 81.0 0.97 Ta.28600.1.S1_at BE443069 - - 2e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.
0.43 62.2 0.95 Ta.20696.1.S1_at BQ804501 - - 1e+1 At5g04180 ACA3 (ALPHA CARBONIC ANHYDRASE 3) O.I. H.G. S.X.
0.40 58.4 0.97 Ta.28600.1.S1_a_at BE443069 - - 2e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.0 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
3.0 94.3 GSM111245 genotype G13 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM138173 genotype DH95 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9 94.0 GSM138204 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9 94.0 GSM138211 genotype B65 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8 93.6 GSM138200 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8 93.6 GSM314281 tissue type: 3-5 DAP caryopsis - rep1 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
2.7 93.3 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g45010, orthologous to the query gene, Ta.28600.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.57 73.8 At3g45010 823636 scpl48 (serine carboxypeptidase-like 48) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. H.G. S.X.
0.40 50.8 At3g06210 819795 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 At5g04200 830299 AtMC9 (metacaspase 9) F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOA O.I. H.G. S.X.
0.17 10.2 At1g26820 839225 RNS3 (RIBONUCLEASE 3) Encodes ribonuclease RNS3. O.I. H.G. S.X.
0.07 1.9 At1g74020 843740 SS2 (STRICTOSIDINE SYNTHASE 2) Encodes AtSS-2 strictosidine synthase. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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