Co-expression analysis

Gene ID	Ta.28600.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g45010: scpl48 (serine carboxypeptidase-like 48) (HF=2e-9)
Module size	6 genes
NF	0.63
%ile	88.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.97	Ta.28600.1.S1_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.28600.3.S1_x_at	CA641063	-	-	4e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.28600.2.S1_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.96	Ta.28600.1.S1_a_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.14101.1.S1_x_at	BQ804732	-	-	2e-10	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.14101.1.S1_at	BQ804732	-	-	2e-10	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.9	99.7	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.5	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM138167	genotype G30 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM138181	genotype A35 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM138173	genotype DH95 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM138166	genotype G30 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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