Co-expression analysis

Gene ID	Ta.28479.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g40780: LHT1 (HF=9e-6)
Module size	15 genes
NF	0.49
%ile	75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	83.9	0.92	Ta.28479.1.S1_at	BJ286275	-	-	9e-6	At5g40780	LHT1	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.94	Ta.6155.1.S1_at	CD867059	-	-	1e-1	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	TaAffx.12418.1.A1_at	BJ265615	-	-	5e-12	At5g38240	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.95	Ta.6155.2.S1_a_at	CA695243	-	-	3e-1	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	Ta.4479.2.S1_a_at	CA735391	-	-	2e+0	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.4479.2.S1_x_at	CA735391	-	-	2e+0	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.93	Ta.26901.1.S1_at	CD373584	-	-	8e-1	At1g06040	STO (SALT TOLERANCE)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	Ta.4479.1.S1_at	CN011595	-	-	2e+0	At3g08762	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.35394.2.A1_at	BG906003	-	-	3e+0	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.22249.1.S1_at	CA690737	-	-	3e+0	At1g13880	ELM2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.119956.1.A1_at	BJ244559	-	-	2e+1	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	Ta.25377.1.S1_at	CD453072	-	-	5e+0	At5g63000	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	Ta.6155.2.S1_x_at	CA695243	-	-	3e-1	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	Ta.27812.1.A1_at	CD863065	-	-	1e+0	At2g25735	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.10874.1.S1_at	CA609878	-	-	5e-1	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.1	99.6	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.4	98.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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