Co-expression analysis

Gene ID	Ta.28378.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g02100: LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69) (HF=1e+0)
Module size	6 genes
NF	0.57
%ile	82.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.91	Ta.28378.2.S1_at	BE515510	-	-	1e+0	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.91	Ta.28537.1.S1_x_at	BQ160686	-	-	3e-1	At5g37550	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.92	TaAffx.69777.1.S1_at	J02961.1	-	-	1e-4	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.94	Ta.147.1.S1_at	M25537.1	agglutinin isolectin D precursor	-	2e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.91	Ta.8085.1.S1_at	CK193776	-	-	1e+1	At4g10600	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	Ta.5396.2.S1_a_at	BJ287380	-	-	5e+0	At5g48820	ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.4	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
28.9	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
27.5	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
24.3	99.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
16.3	99.6	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
15.6	99.6	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
15.1	99.6	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage