Co-expression analysis

Gene ID	Ta.28355.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g43940: HOT5 (sensitive to hot temperatures 5) (HF=5e-19)
Module size	6 genes
NF	0.75
%ile	95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.98	Ta.28355.1.S1_x_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.98	Ta.28355.3.S1_x_at	BJ242210	-	-	7e-27	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.98	Ta.28355.1.S1_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.98	Ta.28355.2.S1_x_at	CA498269	-	-	6e-51	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.28355.2.S1_a_at	CA498269	-	-	6e-51	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.2853.1.S1_at	BJ306897	-	-	2e-6	At2g32520	dienelactone hydrolase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.9	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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