Co-expression analysis

Gene ID	Ta.28254.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At4g39800: MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) (HF=3e-115)
Module size	7 genes
NF	0.03
%ile	8.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.91	Ta.28254.1.S1_s_at	BJ274136	-	-	3e-115	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.25030.1.A1_x_at	CA651136	-	-	1e+1	At4g34760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.91	TaAffx.105673.1.S1_at	CA731253	-	-	1e+0	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.1716.2.S1_a_at	CD895542	-	-	1e+1	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.94	Ta.1060.2.S1_a_at	CA642102	-	-	1e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	Ta.10823.1.A1_s_at	CK151765	-	-	9e-1	At1g53280	DJ-1 family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	Ta.10463.1.A1_at	CD876249	protein kinase	-	5e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.4	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM138192	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
2.3	91.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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