CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28203.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g04640: LIP2 (LIPOYLTRANSFERASE 2) (HF=1e+0)

Module size 7 genes

NF 0.32

%ile 51.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.98 Ta.28203.1.S1_at BG262830 - - 1e+0 At1g04640 LIP2 (LIPOYLTRANSFERASE 2) O.I. H.G. S.X.
0.46 66.8 0.98 TaAffx.3984.1.S1_at CD938015 - - 7e+0 At5g56840 DNA-binding family protein O.I. H.G. S.X.
0.30 40.9 0.98 Ta.6487.1.A1_at CA659409 - - 1e-7 At3g01890 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.25 32.1 0.98 Ta.6624.1.S1_a_at CK208299 - - 4e-4 At2g29530 mitochondrial import inner membrane translocase (TIM10) O.I. H.G. S.X.
0.25 32.1 0.98 Ta.3102.1.A1_at BQ170880 - - 2e+0 At5g67480 BT4 (BTB AND TAZ DOMAIN PROTEIN 4) O.I. H.G. S.X.
0.17 19.8 0.98 Ta.2358.3.S1_x_at CA627906 - - 2e+0 At1g15385 unknown protein O.I. H.G. S.X.
0.15 17.1 0.98 Ta.2358.3.S1_at CA627906 - - 2e+0 At1g15385 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	92.2	0.98	Ta.28203.1.S1_at	BG262830	-	-	1e+0	At1g04640	LIP2 (LIPOYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.46	66.8	0.98	TaAffx.3984.1.S1_at	CD938015	-	-	7e+0	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.
0.30	40.9	0.98	Ta.6487.1.A1_at	CA659409	-	-	1e-7	At3g01890	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.25	32.1	0.98	Ta.6624.1.S1_a_at	CK208299	-	-	4e-4	At2g29530	mitochondrial import inner membrane translocase (TIM10)	O.I.	H.G.	S.X.
0.25	32.1	0.98	Ta.3102.1.A1_at	BQ170880	-	-	2e+0	At5g67480	BT4 (BTB AND TAZ DOMAIN PROTEIN 4)	O.I.	H.G.	S.X.
0.17	19.8	0.98	Ta.2358.3.S1_x_at	CA627906	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.
0.15	17.1	0.98	Ta.2358.3.S1_at	CA627906	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 98.0 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM298080 Leaf tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7 95.8 GSM143492 Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4 95.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM143496 Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2 94.8 GSM139915 Anther pre-meiosis rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM143491 Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9 94.0 GSM139912 Anther pre-meiosis rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7 93.3 GSM143490 Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
6.0	98.0	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM143492	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4	95.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM143496	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM143491	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.9	94.0	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM143490	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g04640, orthologous to the query gene, Ta.28203.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g04640 839462 LIP2 (LIPOYLTRANSFERASE 2) Lipoyltransferase, located in mitochondria but not found in chloroplasts O.I. H.G. S.X.
0.75 86.9 At1g54500 841892 rubredoxin family protein F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP O.I. H.G. S.X.
0.75 86.9 At1g66820 843000 glycine-rich protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOBVFA O.I. H.G. S.X.
0.69 82.9 At4g24930 828595 thylakoid lumenal 17.9 kDa protein, chloroplast F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;P O.I. H.G. S.X.
0.69 82.9 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. O.I. H.G. S.X.
0.69 82.9 At3g56010 824767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P O.I. H.G. S.X.
0.68 82.2 At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF O.I. H.G. S.X.
0.67 81.6 At1g20810 838672 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF O.I. H.G. S.X.
0.67 81.6 At4g03150 828059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP O.I. H.G. S.X.
0.67 81.6 At5g52970 835375 thylakoid lumen 15.0 kDa protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;OBP O.I. H.G. S.X.
0.66 80.1 At1g16880 838259 uridylyltransferase-related F:unknown;P:response to cold;C:chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope;PBO O.I. H.G. S.X.
0.65 79.6 At2g34860 818051 EDA3 (embryo sac development arrest 3) F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMF O.I. H.G. S.X.
0.65 79.6 At3g56650 824832 thylakoid lumenal 20 kDa protein F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO O.I. H.G. S.X.
0.65 79.6 At3g55250 824691 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P O.I. H.G. S.X.
0.64 78.9 At5g45680 834607 FK506-binding protein 1 (FKBP13) F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. H.G. S.X.
0.64 78.9 At2g35410 818107 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA O.I. H.G. S.X.
0.64 78.9 At5g16710 831532 DHAR3 (dehydroascorbate reductase 1) The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. H.G. S.X.
0.64 78.9 At3g51510 824314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.64 78.9 At4g16410 827335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. H.G. S.X.
0.63 78.1 At1g73655 843700 FK506 binding / peptidyl-prolyl cis-trans isomerase F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMF O.I. H.G. S.X.
0.63 78.1 At2g48070 819419 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae. O.I. H.G. S.X.
0.63 78.1 At2g36835 818256 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P O.I. H.G. S.X.
0.63 78.1 At2g44920 819101 thylakoid lumenal 15 kDa protein, chloroplast F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV O.I. H.G. S.X.
0.63 78.1 At5g51110 835185 4-alpha-hydroxytetrahydrobiopterin dehydratase F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF O.I. H.G. S.X.
0.62 77.3 At4g14890 827146 ferredoxin family protein F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV O.I. H.G. S.X.
0.62 77.3 At3g26900 822306 shikimate kinase family protein F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF O.I. H.G. S.X.
0.62 77.3 At2g26340 817174 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P O.I. H.G. S.X.
0.61 76.7 At2g04700 815013 ferredoxin thioredoxin reductase catalytic beta chain family protein F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA O.I. H.G. S.X.
0.60 75.7 At1g32550 840149 ferredoxin family protein F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVF O.I. H.G. S.X.
0.60 75.7 At4g34190 829567 SEP1 (STRESS ENHANCED PROTEIN 1) Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. O.I. H.G. S.X.
0.58 73.8 At1g44920 841058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAO O.I. H.G. S.X.
0.58 73.8 At1g50320 841454 ATHX encodes a prokaryotic thioredoxin O.I. H.G. S.X.
0.58 73.8 At2g30170 817569 catalytic F:catalytic activity;P:biological_process unknown;C:chloroplast;MFOPBA O.I. H.G. S.X.
0.58 73.8 At1g43560 840939 Aty2 (Arabidopsis thioredoxin y2) F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV O.I. H.G. S.X.
0.58 73.8 At2g20890 816623 PSB29 Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. O.I. H.G. S.X.
0.58 73.8 At3g55330 824699 PPL1 (PsbP-like protein 1) F:calcium ion binding;P:photosynthesis;C:in 6 components;POB O.I. H.G. S.X.
0.57 73.8 At2g01590 814688 CRR3 (CHLORORESPIRATORY REDUCTION 3) Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity. O.I. H.G. S.X.
0.56 73.0 At3g08010 819992 ATAB2 Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. O.I. H.G. S.X.
0.55 70.6 At1g67700 843095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;PO O.I. H.G. S.X.
0.55 70.6 At4g10300 826622 - F:molecular_function unknown;P:unknown;C:chloroplast;BOP O.I. H.G. S.X.
0.55 70.6 At5g08050 830699 - F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.54 69.5 At1g63970 842700 ISPF Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF O.I. H.G. S.X.
0.54 69.5 At3g25805 822172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO O.I. H.G. S.X.
0.54 69.5 At4g28030 828918 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA O.I. H.G. S.X.
0.53 68.6 At1g64355 842742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. H.G. S.X.
0.53 68.6 At2g35370 818104 GDCH Encodes glycine decarboxylase complex H protein. Involved in photorespiration. O.I. H.G. S.X.
0.53 68.6 At1g06510 837162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPAV O.I. H.G. S.X.
0.52 67.4 At4g11175 826719 translation initiation factor IF-1, chloroplast, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP O.I. H.G. S.X.
0.52 67.4 At5g38660 833856 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) mutant has Altered acclimation responses; O.I. H.G. S.X.
0.52 67.4 At4g18370 827564 DEG5 (DEGP PROTEASE 5) Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). O.I. H.G. S.X.
0.52 67.4 At3g10060 820167 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. H.G. S.X.
0.52 67.4 At1g50900 841512 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO O.I. H.G. S.X.
0.51 66.3 At4g03520 825653 ATHM2 chloroplast localized thioredoxin, similar to prokaryotic types. O.I. H.G. S.X.
0.51 66.3 At5g47840 834835 AMK2 (Adenosine monophosphate kinase) F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.51 66.3 At1g45474 841099 LHCA5 Encodes a component of the light harvesting complex of photosystem I. O.I. H.G. S.X.
0.51 66.3 At1g76450 843978 oxygen-evolving complex-related F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PO O.I. H.G. S.X.
0.51 66.3 At3g26710 822283 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP O.I. H.G. S.X.
0.51 66.3 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO O.I. H.G. S.X.
0.51 66.3 At5g23120 832376 HCF136 encodes a stability and/or assembly factor of photosystem II O.I. H.G. S.X.
0.51 66.3 At1g68590 843189 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative F:structural constituent of ribosome;P:translation;C:thylakoid, chloroplast thylakoid membrane, chloroplast;OBP O.I. H.G. S.X.
0.51 66.3 At1g70760 843413 CRR23 ((chlororespiratory reduction 23) a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. O.I. H.G. S.X.
0.50 65.3 At5g55710 835665 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP O.I. H.G. S.X.
0.50 65.3 At3g47650 823919 bundle-sheath defective protein 2 family / bsd2 family F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;POB O.I. H.G. S.X.
0.50 65.3 At5g66190 836751 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane. O.I. H.G. S.X.
0.49 63.5 At3g15360 820775 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) encodes a prokaryotic thioredoxin O.I. H.G. S.X.
0.49 63.5 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P O.I. H.G. S.X.
0.49 63.5 At3g04790 819639 ribose 5-phosphate isomerase-related F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP O.I. H.G. S.X.
0.49 63.5 At1g05190 839273 emb2394 (embryo defective 2394) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM O.I. H.G. S.X.
0.49 63.5 At4g01150 828181 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO O.I. H.G. S.X.
0.48 62.5 At3g12780 820461 PGK1 (PHOSPHOGLYCERATE KINASE 1) nuclear phosphoglycerate kinase (PGK1) O.I. H.G. S.X.
0.48 62.5 At1g32470 840141 glycine cleavage system H protein, mitochondrial, putative F:glycine dehydrogenase (decarboxylating) activity;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex, chloroplast;BOPMFA O.I. H.G. S.X.
0.47 61.2 At1g75350 843871 emb2184 (embryo defective 2184) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. H.G. S.X.
0.47 61.2 At1g29070 839781 ribosomal protein L34 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF O.I. H.G. S.X.
0.47 61.2 At3g23700 821951 S1 RNA-binding domain-containing protein F:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFA O.I. H.G. S.X.
0.47 61.2 At2g27680 817314 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAM O.I. H.G. S.X.
0.47 61.2 At4g35760 829729 - F:unknown;P:unknown;C:chloroplast;OBP O.I. H.G. S.X.
0.46 59.8 At3g02730 821260 TRXF1 (THIOREDOXIN F-TYPE 1) F:enzyme activator activity;P:positive regulation of catalytic activity;C:chloroplast, chloroplast stroma;BOMPFAV O.I. H.G. S.X.
0.46 59.8 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.46 59.8 At4g32260 829359 ATP synthase family F:hydrogen ion transmembrane transporter activity;P:defense response to bacterium;C:thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;BOPMAFV O.I. H.G. S.X.
0.46 59.8 At2g21960 816732 unknown protein F:unknown;P:unknown;C:chloroplast;PBO O.I. H.G. S.X.
0.45 58.3 At3g54210 824588 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP O.I. H.G. S.X.
0.45 58.3 At5g14910 831343 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. H.G. S.X.
0.45 58.3 At5g14320 831282 30S ribosomal protein S13, chloroplast (CS13) F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA O.I. H.G. S.X.
0.44 57.2 At1g22700 838876 tetratricopeptide repeat (TPR)-containing protein Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis. O.I. H.G. S.X.
0.44 57.2 At3g11630 820335 2-cys peroxiredoxin, chloroplast (BAS1) Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues. O.I. H.G. S.X.
0.44 57.2 At5g03880 831679 electron carrier F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM O.I. H.G. S.X.
0.44 57.2 At1g32070 840099 ATNSI (NUCLEAR SHUTTLE INTERACTING) Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature. O.I. H.G. S.X.
0.43 55.3 At5g13510 831195 ribosomal protein L10 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF O.I. H.G. S.X.
0.43 55.3 At1g32990 840194 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 O.I. H.G. S.X.
0.42 53.9 At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF O.I. H.G. S.X.
0.42 53.9 At5g53580 835440 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA O.I. H.G. S.X.
0.42 53.9 At5g48590 834916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. H.G. S.X.
0.42 53.9 At5g30510 833138 RPS1 (RIBOSOMAL PROTEIN S1) F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA O.I. H.G. S.X.
0.41 52.4 At1g35680 840472 50S ribosomal protein L21, chloroplast / CL21 (RPL21) F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF O.I. H.G. S.X.
0.41 52.4 At4g14910 827149 imidazoleglycerol-phosphate dehydratase, putative F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM O.I. H.G. S.X.
0.40 50.8 At1g03475 839489 LIN2 (LESION INITIATION 2) Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection. O.I. H.G. S.X.
0.33 38.1 At1g11750 837719 CLPP6 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At1g04640	839462	LIP2 (LIPOYLTRANSFERASE 2)	Lipoyltransferase, located in mitochondria but not found in chloroplasts	O.I.	H.G.	S.X.
0.75	86.9	At1g54500	841892	rubredoxin family protein	F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP	O.I.	H.G.	S.X.
0.75	86.9	At1g66820	843000	glycine-rich protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOBVFA	O.I.	H.G.	S.X.
0.69	82.9	At4g24930	828595	thylakoid lumenal 17.9 kDa protein, chloroplast	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;P	O.I.	H.G.	S.X.
0.69	82.9	At1g03680	839436	ATHM1	encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.	O.I.	H.G.	S.X.
0.69	82.9	At3g56010	824767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P	O.I.	H.G.	S.X.
0.68	82.2	At1g18170	838396	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF	O.I.	H.G.	S.X.
0.67	81.6	At1g20810	838672	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF	O.I.	H.G.	S.X.
0.67	81.6	At4g03150	828059	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP	O.I.	H.G.	S.X.
0.67	81.6	At5g52970	835375	thylakoid lumen 15.0 kDa protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;OBP	O.I.	H.G.	S.X.
0.66	80.1	At1g16880	838259	uridylyltransferase-related	F:unknown;P:response to cold;C:chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope;PBO	O.I.	H.G.	S.X.
0.65	79.6	At2g34860	818051	EDA3 (embryo sac development arrest 3)	F:unfolded protein binding, heat shock protein binding;P:megagametogenesis;C:chloroplast thylakoid membrane, chloroplast;BOPAMF	O.I.	H.G.	S.X.
0.65	79.6	At3g56650	824832	thylakoid lumenal 20 kDa protein	F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO	O.I.	H.G.	S.X.
0.65	79.6	At3g55250	824691	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P	O.I.	H.G.	S.X.
0.64	78.9	At5g45680	834607	FK506-binding protein 1 (FKBP13)	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	H.G.	S.X.
0.64	78.9	At2g35410	818107	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA	O.I.	H.G.	S.X.
0.64	78.9	At5g16710	831532	DHAR3 (dehydroascorbate reductase 1)	The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	H.G.	S.X.
0.64	78.9	At3g51510	824314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	H.G.	S.X.
0.64	78.9	At4g16410	827335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	H.G.	S.X.
0.63	78.1	At1g73655	843700	FK506 binding / peptidyl-prolyl cis-trans isomerase	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMF	O.I.	H.G.	S.X.
0.63	78.1	At2g48070	819419	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	O.I.	H.G.	S.X.
0.63	78.1	At2g36835	818256	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P	O.I.	H.G.	S.X.
0.63	78.1	At2g44920	819101	thylakoid lumenal 15 kDa protein, chloroplast	F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV	O.I.	H.G.	S.X.
0.63	78.1	At5g51110	835185	4-alpha-hydroxytetrahydrobiopterin dehydratase	F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF	O.I.	H.G.	S.X.
0.62	77.3	At4g14890	827146	ferredoxin family protein	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV	O.I.	H.G.	S.X.
0.62	77.3	At3g26900	822306	shikimate kinase family protein	F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF	O.I.	H.G.	S.X.
0.62	77.3	At2g26340	817174	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P	O.I.	H.G.	S.X.
0.61	76.7	At2g04700	815013	ferredoxin thioredoxin reductase catalytic beta chain family protein	F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA	O.I.	H.G.	S.X.
0.60	75.7	At1g32550	840149	ferredoxin family protein	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVF	O.I.	H.G.	S.X.
0.60	75.7	At4g34190	829567	SEP1 (STRESS ENHANCED PROTEIN 1)	Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.	O.I.	H.G.	S.X.
0.58	73.8	At1g44920	841058	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPAO	O.I.	H.G.	S.X.
0.58	73.8	At1g50320	841454	ATHX	encodes a prokaryotic thioredoxin	O.I.	H.G.	S.X.
0.58	73.8	At2g30170	817569	catalytic	F:catalytic activity;P:biological_process unknown;C:chloroplast;MFOPBA	O.I.	H.G.	S.X.
0.58	73.8	At1g43560	840939	Aty2 (Arabidopsis thioredoxin y2)	F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV	O.I.	H.G.	S.X.
0.58	73.8	At2g20890	816623	PSB29	Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.	O.I.	H.G.	S.X.
0.58	73.8	At3g55330	824699	PPL1 (PsbP-like protein 1)	F:calcium ion binding;P:photosynthesis;C:in 6 components;POB	O.I.	H.G.	S.X.
0.57	73.8	At2g01590	814688	CRR3 (CHLORORESPIRATORY REDUCTION 3)	Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.	O.I.	H.G.	S.X.
0.56	73.0	At3g08010	819992	ATAB2	Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.	O.I.	H.G.	S.X.
0.55	70.6	At1g67700	843095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;PO	O.I.	H.G.	S.X.
0.55	70.6	At4g10300	826622	-	F:molecular_function unknown;P:unknown;C:chloroplast;BOP	O.I.	H.G.	S.X.
0.55	70.6	At5g08050	830699	-	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO	O.I.	H.G.	S.X.
0.54	69.5	At1g63970	842700	ISPF	Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF	O.I.	H.G.	S.X.
0.54	69.5	At3g25805	822172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO	O.I.	H.G.	S.X.
0.54	69.5	At4g28030	828918	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA	O.I.	H.G.	S.X.
0.53	68.6	At1g64355	842742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	H.G.	S.X.
0.53	68.6	At2g35370	818104	GDCH	Encodes glycine decarboxylase complex H protein. Involved in photorespiration.	O.I.	H.G.	S.X.
0.53	68.6	At1g06510	837162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPAV	O.I.	H.G.	S.X.
0.52	67.4	At4g11175	826719	translation initiation factor IF-1, chloroplast, putative	F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP	O.I.	H.G.	S.X.
0.52	67.4	At5g38660	833856	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	mutant has Altered acclimation responses;	O.I.	H.G.	S.X.
0.52	67.4	At4g18370	827564	DEG5 (DEGP PROTEASE 5)	Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).	O.I.	H.G.	S.X.
0.52	67.4	At3g10060	820167	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	H.G.	S.X.
0.52	67.4	At1g50900	841512	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO	O.I.	H.G.	S.X.
0.51	66.3	At4g03520	825653	ATHM2	chloroplast localized thioredoxin, similar to prokaryotic types.	O.I.	H.G.	S.X.
0.51	66.3	At5g47840	834835	AMK2 (Adenosine monophosphate kinase)	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.51	66.3	At1g45474	841099	LHCA5	Encodes a component of the light harvesting complex of photosystem I.	O.I.	H.G.	S.X.
0.51	66.3	At1g76450	843978	oxygen-evolving complex-related	F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PO	O.I.	H.G.	S.X.
0.51	66.3	At3g26710	822283	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.51	66.3	At5g07020	830593	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO	O.I.	H.G.	S.X.
0.51	66.3	At5g23120	832376	HCF136	encodes a stability and/or assembly factor of photosystem II	O.I.	H.G.	S.X.
0.51	66.3	At1g68590	843189	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	F:structural constituent of ribosome;P:translation;C:thylakoid, chloroplast thylakoid membrane, chloroplast;OBP	O.I.	H.G.	S.X.
0.51	66.3	At1g70760	843413	CRR23 ((chlororespiratory reduction 23)	a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.	O.I.	H.G.	S.X.
0.50	65.3	At5g55710	835665	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP	O.I.	H.G.	S.X.
0.50	65.3	At3g47650	823919	bundle-sheath defective protein 2 family / bsd2 family	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;POB	O.I.	H.G.	S.X.
0.50	65.3	At5g66190	836751	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.	O.I.	H.G.	S.X.
0.49	63.5	At3g15360	820775	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	encodes a prokaryotic thioredoxin	O.I.	H.G.	S.X.
0.49	63.5	At1g14150	837974	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P	O.I.	H.G.	S.X.
0.49	63.5	At3g04790	819639	ribose 5-phosphate isomerase-related	F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP	O.I.	H.G.	S.X.
0.49	63.5	At1g05190	839273	emb2394 (embryo defective 2394)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM	O.I.	H.G.	S.X.
0.49	63.5	At4g01150	828181	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO	O.I.	H.G.	S.X.
0.48	62.5	At3g12780	820461	PGK1 (PHOSPHOGLYCERATE KINASE 1)	nuclear phosphoglycerate kinase (PGK1)	O.I.	H.G.	S.X.
0.48	62.5	At1g32470	840141	glycine cleavage system H protein, mitochondrial, putative	F:glycine dehydrogenase (decarboxylating) activity;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex, chloroplast;BOPMFA	O.I.	H.G.	S.X.
0.47	61.2	At1g75350	843871	emb2184 (embryo defective 2184)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	H.G.	S.X.
0.47	61.2	At1g29070	839781	ribosomal protein L34 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF	O.I.	H.G.	S.X.
0.47	61.2	At3g23700	821951	S1 RNA-binding domain-containing protein	F:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFA	O.I.	H.G.	S.X.
0.47	61.2	At2g27680	817314	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall;BOFPAM	O.I.	H.G.	S.X.
0.47	61.2	At4g35760	829729	-	F:unknown;P:unknown;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.46	59.8	At3g02730	821260	TRXF1 (THIOREDOXIN F-TYPE 1)	F:enzyme activator activity;P:positive regulation of catalytic activity;C:chloroplast, chloroplast stroma;BOMPFAV	O.I.	H.G.	S.X.
0.46	59.8	At1g67280	843048	lactoylglutathione lyase, putative / glyoxalase I, putative	F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.46	59.8	At4g32260	829359	ATP synthase family	F:hydrogen ion transmembrane transporter activity;P:defense response to bacterium;C:thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;BOPMAFV	O.I.	H.G.	S.X.
0.46	59.8	At2g21960	816732	unknown protein	F:unknown;P:unknown;C:chloroplast;PBO	O.I.	H.G.	S.X.
0.45	58.3	At3g54210	824588	ribosomal protein L17 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFP	O.I.	H.G.	S.X.
0.45	58.3	At5g14910	831343	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	H.G.	S.X.
0.45	58.3	At5g14320	831282	30S ribosomal protein S13, chloroplast (CS13)	F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFA	O.I.	H.G.	S.X.
0.44	57.2	At1g22700	838876	tetratricopeptide repeat (TPR)-containing protein	Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.	O.I.	H.G.	S.X.
0.44	57.2	At3g11630	820335	2-cys peroxiredoxin, chloroplast (BAS1)	Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.	O.I.	H.G.	S.X.
0.44	57.2	At5g03880	831679	electron carrier	F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM	O.I.	H.G.	S.X.
0.44	57.2	At1g32070	840099	ATNSI (NUCLEAR SHUTTLE INTERACTING)	Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.	O.I.	H.G.	S.X.
0.43	55.3	At5g13510	831195	ribosomal protein L10 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF	O.I.	H.G.	S.X.
0.43	55.3	At1g32990	840194	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11	O.I.	H.G.	S.X.
0.42	53.9	At3g13120	820500	30S ribosomal protein S10, chloroplast, putative	F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF	O.I.	H.G.	S.X.
0.42	53.9	At5g53580	835440	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA	O.I.	H.G.	S.X.
0.42	53.9	At5g48590	834916	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	H.G.	S.X.
0.42	53.9	At5g30510	833138	RPS1 (RIBOSOMAL PROTEIN S1)	F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA	O.I.	H.G.	S.X.
0.41	52.4	At1g35680	840472	50S ribosomal protein L21, chloroplast / CL21 (RPL21)	F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMF	O.I.	H.G.	S.X.
0.41	52.4	At4g14910	827149	imidazoleglycerol-phosphate dehydratase, putative	F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM	O.I.	H.G.	S.X.
0.40	50.8	At1g03475	839489	LIN2 (LESION INITIATION 2)	Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.	O.I.	H.G.	S.X.
0.33	38.1	At1g11750	837719	CLPP6	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	O.I.	H.G.	S.X.

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Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Ta.28203.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04640: LIP2 (LIPOYLTRANSFERASE 2) (HF=1e+0)
Module size	7 genes
NF	0.32
%ile	51.7

Co-expression analysis

Gene ID Ta.28203.1.S1_at Gene name Homology with ArabidopsisSimilar to At1g04640: LIP2 (LIPOYLTRANSFERASE 2) (HF=1e+0) Module size 7 genes NF 0.32 %ile 51.7

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.28203.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g04640: LIP2 (LIPOYLTRANSFERASE 2) (HF=1e+0)

Module size 7 genes

NF 0.32

%ile 51.7

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays