Co-expression analysis

Gene ID	Ta.28142.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g47700: 60S acidic ribosomal protein P1 (RPP1C) (HF=3e-1)
Module size	6 genes
NF	0.55
%ile	81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	0.93	Ta.28142.2.S1_at	CA644586	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.93	TaAffx.107813.1.S1_at	CA694939	-	-	4e+0	At5g47830	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	Ta.24767.3.S1_at	CA737843	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.93	Ta.9049.2.A1_at	CA606630	-	-	3e-1	At2g19480	NAP1	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	Ta.7894.3.A1_at	CA680072	-	-	4e+0	At3g51300	ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.92	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
38.9	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
8.3	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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