CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.28122.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g19257: unknown protein (HF=2e+1)

Module size 43 genes

NF 0.41

%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.1 0.91 Ta.28122.1.S1_at CA624634 - - 2e+1 At5g19257 unknown protein O.I. H.G. S.X.
0.56 78.6 0.95 TaAffx.110652.1.S1_at CA656567 - - 1e-2 At2g23690 unknown protein O.I. H.G. S.X.
0.54 75.5 0.94 TaAffx.110167.1.S1_at CA662870 - - 4e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) O.I. H.G. S.X.
0.52 73.7 0.94 TaAffx.82721.1.S1_at CA668034 - - 3e+1 At4g20780 calcium-binding protein, putative O.I. H.G. S.X.
0.52 73.7 0.93 Ta.24389.1.S1_at CA622168 - - 9e-1 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) O.I. H.G. S.X.
0.52 73.7 0.93 TaAffx.107008.1.S1_at CA707795 - - 7e-2 At2g24940 AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2) O.I. H.G. S.X.
0.49 69.7 0.93 TaAffx.120245.1.S1_at BJ234869 - - 1e-1 At4g17800 DNA-binding protein-related O.I. H.G. S.X.
0.49 69.7 0.92 TaAffx.31847.1.S1_at CA606601 - - 1e+0 At1g21864 - O.I. H.G. S.X.
0.48 69.0 0.92 TaAffx.99246.2.S1_at CA657762 - - 1e+0 At3g16770 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) O.I. H.G. S.X.
0.48 69.0 0.94 TaAffx.85723.1.S1_at CA620198 - - 1e+0 At4g13950 RALFL31 (ralf-like 31) O.I. H.G. S.X.
0.48 69.0 0.93 TaAffx.117120.1.S1_at BQ608896 - - 4e+0 At1g56700 pyrrolidone-carboxylate peptidase family protein O.I. H.G. S.X.
0.48 69.0 0.93 TaAffx.105503.1.S1_at CA733364 - - 1e+0 At5g44200 CBP20 (CAP-BINDING PROTEIN 20) O.I. H.G. S.X.
0.47 67.9 0.94 Ta.26652.1.A1_at CD491481 - - 1e-3 At1g36050 unknown protein O.I. H.G. S.X.
0.46 66.8 0.94 TaAffx.51397.1.S1_at CA725473 - - 4e-49 At1g23490 ATARF1 (ADP-RIBOSYLATION FACTOR 1) O.I. H.G. S.X.
0.45 65.2 0.94 TaAffx.114049.1.S1_at CA599641 - - 5e+0 At4g33560 unknown protein O.I. H.G. S.X.
0.44 64.5 0.92 TaAffx.120617.1.S1_at BJ212756 - - 4e+0 At2g39470 PPL2 (PsbP-like protein 2) O.I. H.G. S.X.
0.44 64.5 0.94 TaAffx.58994.1.S1_at CA610461 - - 4e+0 At3g52510 - O.I. H.G. S.X.
0.44 64.5 0.92 Ta.26673.1.A1_at CD491535 - - 1e-9 At2g32950 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) O.I. H.G. S.X.
0.44 64.5 0.94 TaAffx.83840.1.S1_at CA649783 - - 4e+0 At1g28170 sulfotransferase family protein O.I. H.G. S.X.
0.44 64.5 0.94 TaAffx.119081.1.S1_at BJ291857 - - 2e+1 At5g45700 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.43 62.2 0.94 TaAffx.132656.2.S1_at CA600729 - - 1e+0 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) O.I. H.G. S.X.
0.41 59.6 0.94 TaAffx.85941.1.S1_at CA618291 - - 2e+1 At5g23760 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.41 59.6 0.93 TaAffx.78428.1.S1_at CA732797 - - 1e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.41 59.6 0.93 TaAffx.79532.1.S1_at CA713411 - - 3e+1 At4g02360 unknown protein O.I. H.G. S.X.
0.40 58.4 0.95 Ta.3911.2.S1_s_at CA604151 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) O.I. H.G. S.X.
0.40 58.4 0.94 Ta.16201.1.S1_at CA602442 - - 3e+0 At5g57535 unknown protein O.I. H.G. S.X.
0.38 54.7 0.94 TaAffx.119035.1.A1_at BJ295436 - - 1e+0 At2g13720 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) O.I. H.G. S.X.
0.37 53.0 0.94 TaAffx.111311.1.S1_at CA643595 - - 1e+0 At1g61940 AtTLP4 (TUBBY LIKE PROTEIN 4) O.I. H.G. S.X.
0.36 51.9 0.94 TaAffx.82014.1.S1_at CA678857 - - 1e+0 At1g45063 copper ion binding / electron carrier O.I. H.G. S.X.
0.35 49.8 0.94 Ta.21581.1.S1_at CA696527 - - 4e+0 At2g36460 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.34 48.1 0.92 TaAffx.120295.1.S1_at BJ232977 - - 2e+1 At5g42504 unknown protein O.I. H.G. S.X.
0.33 46.9 0.94 TaAffx.51905.1.S1_at CA716652 - - 3e+0 At3g25760 AOC1 (ALLENE OXIDE CYCLASE 1) O.I. H.G. S.X.
0.33 46.9 0.94 TaAffx.57555.1.S1_at CA618738 - - 2e+1 At5g67600 unknown protein O.I. H.G. S.X.
0.33 46.9 0.92 Ta.16453.1.S1_at CA606648 - - 1e+0 At4g29650 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase O.I. H.G. S.X.
0.33 46.9 0.94 TaAffx.5596.1.S1_at CA705635 - - 3e+0 At1g12250 thylakoid lumenal protein-related O.I. H.G. S.X.
0.33 46.9 0.95 TaAffx.85817.1.S1_at CA619362 - - 4e+0 At4g17800 DNA-binding protein-related O.I. H.G. S.X.
0.32 44.4 0.92 Ta.5258.1.S1_at CK207008 - - 2e-3 At2g35780 scpl26 (serine carboxypeptidase-like 26) O.I. H.G. S.X.
0.31 42.7 0.93 Ta.16516.1.S1_at CA607620 - - 9e-1 At5g35475 - O.I. H.G. S.X.
0.30 40.9 0.94 TaAffx.6157.1.S1_at CA690748 - - 4e+0 At2g42930 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.29 39.2 0.93 TaAffx.53587.2.S1_at CA697989 - - 7e-2 At4g34290 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.28 39.2 0.94 TaAffx.50210.1.S1_at CA744417 - - 7e-2 At1g60880 AGL56 O.I. H.G. S.X.
0.25 32.1 0.94 TaAffx.64156.1.S1_at BJ313261 - - 4e+0 At5g19830 aminoacyl-tRNA hydrolase O.I. H.G. S.X.
0.19 22.4 0.94 TaAffx.93677.1.S1_at BG906767 - - 3e+0 At5g19473 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.1	0.91	Ta.28122.1.S1_at	CA624634	-	-	2e+1	At5g19257	unknown protein	O.I.	H.G.	S.X.
0.56	78.6	0.95	TaAffx.110652.1.S1_at	CA656567	-	-	1e-2	At2g23690	unknown protein	O.I.	H.G.	S.X.
0.54	75.5	0.94	TaAffx.110167.1.S1_at	CA662870	-	-	4e+0	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.
0.52	73.7	0.94	TaAffx.82721.1.S1_at	CA668034	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.
0.52	73.7	0.93	Ta.24389.1.S1_at	CA622168	-	-	9e-1	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	O.I.	H.G.	S.X.
0.52	73.7	0.93	TaAffx.107008.1.S1_at	CA707795	-	-	7e-2	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	O.I.	H.G.	S.X.
0.49	69.7	0.93	TaAffx.120245.1.S1_at	BJ234869	-	-	1e-1	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.
0.49	69.7	0.92	TaAffx.31847.1.S1_at	CA606601	-	-	1e+0	At1g21864	-	O.I.	H.G.	S.X.
0.48	69.0	0.92	TaAffx.99246.2.S1_at	CA657762	-	-	1e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.
0.48	69.0	0.94	TaAffx.85723.1.S1_at	CA620198	-	-	1e+0	At4g13950	RALFL31 (ralf-like 31)	O.I.	H.G.	S.X.
0.48	69.0	0.93	TaAffx.117120.1.S1_at	BQ608896	-	-	4e+0	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.
0.48	69.0	0.93	TaAffx.105503.1.S1_at	CA733364	-	-	1e+0	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.
0.47	67.9	0.94	Ta.26652.1.A1_at	CD491481	-	-	1e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.
0.46	66.8	0.94	TaAffx.51397.1.S1_at	CA725473	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.
0.45	65.2	0.94	TaAffx.114049.1.S1_at	CA599641	-	-	5e+0	At4g33560	unknown protein	O.I.	H.G.	S.X.
0.44	64.5	0.92	TaAffx.120617.1.S1_at	BJ212756	-	-	4e+0	At2g39470	PPL2 (PsbP-like protein 2)	O.I.	H.G.	S.X.
0.44	64.5	0.94	TaAffx.58994.1.S1_at	CA610461	-	-	4e+0	At3g52510	-	O.I.	H.G.	S.X.
0.44	64.5	0.92	Ta.26673.1.A1_at	CD491535	-	-	1e-9	At2g32950	COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)	O.I.	H.G.	S.X.
0.44	64.5	0.94	TaAffx.83840.1.S1_at	CA649783	-	-	4e+0	At1g28170	sulfotransferase family protein	O.I.	H.G.	S.X.
0.44	64.5	0.94	TaAffx.119081.1.S1_at	BJ291857	-	-	2e+1	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.43	62.2	0.94	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.
0.41	59.6	0.94	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.41	59.6	0.93	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.
0.41	59.6	0.93	TaAffx.79532.1.S1_at	CA713411	-	-	3e+1	At4g02360	unknown protein	O.I.	H.G.	S.X.
0.40	58.4	0.95	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.
0.40	58.4	0.94	Ta.16201.1.S1_at	CA602442	-	-	3e+0	At5g57535	unknown protein	O.I.	H.G.	S.X.
0.38	54.7	0.94	TaAffx.119035.1.A1_at	BJ295436	-	-	1e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.
0.37	53.0	0.94	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.
0.36	51.9	0.94	TaAffx.82014.1.S1_at	CA678857	-	-	1e+0	At1g45063	copper ion binding / electron carrier	O.I.	H.G.	S.X.
0.35	49.8	0.94	Ta.21581.1.S1_at	CA696527	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.
0.34	48.1	0.92	TaAffx.120295.1.S1_at	BJ232977	-	-	2e+1	At5g42504	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	0.94	TaAffx.51905.1.S1_at	CA716652	-	-	3e+0	At3g25760	AOC1 (ALLENE OXIDE CYCLASE 1)	O.I.	H.G.	S.X.
0.33	46.9	0.94	TaAffx.57555.1.S1_at	CA618738	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	0.92	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.
0.33	46.9	0.94	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.
0.33	46.9	0.95	TaAffx.85817.1.S1_at	CA619362	-	-	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.
0.32	44.4	0.92	Ta.5258.1.S1_at	CK207008	-	-	2e-3	At2g35780	scpl26 (serine carboxypeptidase-like 26)	O.I.	H.G.	S.X.
0.31	42.7	0.93	Ta.16516.1.S1_at	CA607620	-	-	9e-1	At5g35475	-	O.I.	H.G.	S.X.
0.30	40.9	0.94	TaAffx.6157.1.S1_at	CA690748	-	-	4e+0	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.
0.29	39.2	0.93	TaAffx.53587.2.S1_at	CA697989	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.28	39.2	0.94	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.
0.25	32.1	0.94	TaAffx.64156.1.S1_at	BJ313261	-	-	4e+0	At5g19830	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.
0.19	22.4	0.94	TaAffx.93677.1.S1_at	BG906767	-	-	3e+0	At5g19473	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.5 99.2 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.4 98.9 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7 97.9 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7 97.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.0 96.3 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.5	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.4	98.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7	97.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7	97.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Ta.28122.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g19257: unknown protein (HF=2e+1)
Module size	43 genes
NF	0.41
%ile	65.8

Co-expression analysis

Gene ID Ta.28122.1.S1_at Gene name Homology with ArabidopsisSimilar to At5g19257: unknown protein (HF=2e+1) Module size 43 genes NF 0.41 %ile 65.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.28122.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g19257: unknown protein (HF=2e+1)

Module size 43 genes

NF 0.41

%ile 65.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays