Co-expression analysis

Gene ID	Ta.28013.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g13100: zinc finger (C3HC4-type RING finger) family protein (HF=2e-3)
Module size	16 genes
NF	0.43
%ile	68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.8	0.95	Ta.28013.1.S1_x_at	CA612607	-	-	2e-3	At4g13100	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.98	Ta.3739.1.S1_s_at	BJ219030	-	-	2e-2	At2g20820	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.97	Ta.9569.1.S1_a_at	CK213736	-	-	3e-18	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.1077.1.S1_x_at	CA700934	-	-	2e+0	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.97	Ta.1043.1.S1_at	CK167660	-	-	2e-4	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.98	Ta.28170.1.S1_s_at	CA722194	-	-	3e-1	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.12748.1.S1_a_at	CK156904	-	-	7e-9	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.23107.3.S1_a_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.2612.1.S1_a_at	CA633126	-	-	2e-3	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.9569.1.S1_x_at	CK213736	-	-	3e-18	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.12727.2.S1_at	CA606625	-	-	5e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.1789.1.S1_at	BJ281564	-	-	4e-7	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.14605.1.S1_at	BQ838001	-	-	3e-1	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.98	Ta.2612.2.S1_x_at	BU100759	-	-	2e-3	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.12748.2.S1_x_at	CK212529	-	-	9e-11	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.98	Ta.13823.1.S1_a_at	CK152063	-	-	7e+0	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.0	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM138208	genotype H23 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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