Co-expression analysis

Gene ID Ta.27979.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g28590: DNA-binding protein-related (HF=4e+0)
Module size 18 genes
NF 0.29
%ile 47.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8292.70.91Ta.27979.1.S1_atCD923810--4e+0At5g28590DNA-binding protein-relatedO.I.H.G.S.X.
0.5374.90.93TaAffx.78545.2.S1_atCA627335WRKY39 transcription factor-4e-3At4g33780-O.I.H.G.S.X.
0.3956.10.93TaAffx.78717.1.S1_atCA728365--3e+0At2g24570WRKY17O.I.H.G.S.X.
0.3651.90.93TaAffx.58161.1.S1_atCA621887--3e+0At5g67070RALFL34 (ralf-like 34)O.I.H.G.S.X.
0.3244.40.95TaAffx.34241.2.S1_atCA722326--4e+0At5g51960-O.I.H.G.S.X.
0.3142.70.94Ta.26748.1.S1_atCD491037--4e-1At2g38630-O.I.H.G.S.X.
0.3142.70.95TaAffx.29732.1.S1_atCA636473--7e-1At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.2939.20.94TaAffx.34241.2.S1_x_atCA722326--4e+0At5g51960-O.I.H.G.S.X.
0.2839.20.94Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.
0.2633.60.95TaAffx.30598.1.S1_atCA623743--1e+0At3g05230signal peptidase subunit family proteinO.I.H.G.S.X.
0.2532.10.95TaAffx.57555.1.S1_atCA618738--2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.2532.10.95TaAffx.50210.1.S1_atCA744417--7e-2At1g60880AGL56O.I.H.G.S.X.
0.2430.30.92Ta.20393.1.S1_x_atCA485809--3e-1At1g78320ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)O.I.H.G.S.X.
0.2125.50.95TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.2125.50.93TaAffx.110483.1.S1_atCA658529--2e+1Atmg00750-O.I.H.G.S.X.
0.2024.00.94TaAffx.7213.1.S1_atCA665202--2e+1At5g27510protein kinase family proteinO.I.H.G.S.X.
0.2024.00.95TaAffx.58638.1.S1_atCA617698--4e+0At1g12805nucleotide bindingO.I.H.G.S.X.
0.1415.80.94Ta.3203.2.S1_x_atCA621738--5e-6At1g27530-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.199.2GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.598.6GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
6.998.4GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.798.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.598.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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